Inferring Variation in Copy Number Using High Throughput Sequencing Data in R

Por Knaus, Brian J., Grünwald, Niklaus J.
Publicado no Front Genet (2018)

Evolution of RXLR-Class Effectors in the Oomycete Plant Pathogen Phytophthora ramorum

Por Goss, Erica M., Press, Caroline M., Grünwald, Niklaus J.
Publicado em 2013

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

Por Kamvar, Zhian N., Tabima, Javier F., Grünwald, Niklaus J.
Publicado em 2014

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

Por Kamvar, Zhian N., Brooks, Jonah C., Grünwald, Niklaus J.
Publicado no Front Genet (2015)

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

Por Foster, Zachary S. L., Sharpton, Thomas J., Grünwald, Niklaus J.
Publicado no PLoS Comput Biol (2017)

Taxa: An R package implementing data standards and methods for taxonomic data

Por Foster, Zachary S.L., Chamberlain, Scott, Grünwald, Niklaus J.
Publicado no F1000Res (2018)

Expansion and Divergence of Argonaute Genes in the Oomycete Genus Phytophthora

Por Bollmann, Stephanie R., Press, Caroline M., Tyler, Brett M., Grünwald, Niklaus J.
Publicado no Front Microbiol (2018)

Population Genetic Analysis Infers Migration Pathways of Phytophthora ramorum in US Nurseries

Por Goss, Erica M., Larsen, Meg, Chastagner, Gary A., Givens, Donald R., Grünwald, Niklaus J.
Publicado em 2009

Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora

Por Bollmann, Stephanie R., Fang, Yufeng, Press, Caroline M., Tyler, Brett M., Grünwald, Niklaus J.
Publicado no Front Plant Sci (2016)

Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria

Por Davis II, Edward W., Weisberg, Alexandra J., Tabima, Javier F., Grunwald, Niklaus J., Chang, Jeff H.
Publicado no PeerJ (2016)

Response to comments on “Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management”

Por Chang, Jeff H, Putnam, Melodie L, Grünwald, Niklaus J, Savory, Elizabeth A, Fuller, Skylar L, Weisberg, Alexandra J
Publicado no eLife (2018)

Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs

Por Martin, Frank N., Zhang, Yonghong, Cooke, David E. L., Coffey, Mike D., Grünwald, Niklaus J., Fry, William E.
Publicado no PLoS One (2019)

The Plant Pathogen Phytophthora andina Emerged via Hybridization of an Unknown Phytophthora Species and the Irish Potato Famine Pathogen, P. infestans

Por Goss, Erica M., Cardenas, Martha E., Myers, Kevin, Forbes, Gregory A., Fry, William E., Restrepo, Silvia, Grünwald, Niklaus J.
Publicado em 2011

Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus

Por Garnica, Diana P, Pinzón, Andrés M, Quesada-Ocampo, Lina M, Bernal, Adriana J, Barreto, Emiliano, Grünwald, Niklaus J, Restrepo, Silvia
Publicado em 2006

Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

Por Arsenault-Labrecque, Geneviève, Sonah, Humira, Lebreton, Amandine, Labbé, Caroline, Marchand, Geneviève, Xue, Allen, Belzile, François, Knaus, Brian J., Grünwald, Niklaus J., Bélanger, Richard R.
Publicado no BMC Biol (2018)

The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

Por Goss, Erica M., Tabima, Javier F., Cooke, David E. L., Restrepo, Silvia, Fry, William E., Forbes, Gregory A., Fieland, Valerie J., Cardenas, Martha, Grünwald, Niklaus J.
Publicado em 2014

Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

Por Kasuga, Takao, Bui, Mai, Bernhardt, Elizabeth, Swiecki, Tedmund, Aram, Kamyar, Cano, Liliana M., Webber, Joan, Brasier, Clive, Press, Caroline, Grünwald, Niklaus J., Rizzo, David M., Garbelotto, Matteo
Publicado no BMC Genomics (2016)

Microbe-ID: an open source toolbox for microbial genotyping and species identification

Por Tabima, Javier F., Everhart, Sydney E., Larsen, Meredith M., Weisberg, Alexandra J., Kamvar, Zhian N., Tancos, Matthew A., Smart, Christine D., Chang, Jeff H., Grünwald, Niklaus J.
Publicado no PeerJ (2016)

Genetic diversity of <it>Phytophthora infestans </it>in the Northern Andean region

Por Grünwald Niklaus J, Lagos Luz E, Fermín Gustavo, Marín Mauricio, Vargas Angela, González-Almario Adriana, Rojas Alejandro, Sierra Roberto, Grajales Alejandro, Cárdenas Martha, Bernal Adriana, Salazar Camilo, Restrepo Silvia
Publicado em 2011-02-01

Genetic diversity of Phytophthora infestans in the Northern Andean region

Por Cárdenas, Martha, Grajales, Alejandro, Sierra, Roberto, Rojas, Alejandro, González-Almario, Adriana, Vargas, Angela, Marín, Mauricio, Fermín, Gustavo, Lagos, Luz E, Grünwald, Niklaus J, Bernal, Adriana, Salazar, Camilo, Restrepo, Silvia
Publicado em 2011