Base-Pairing Versatility Determines Wobble Sites in tRNA Anticodons of Vertebrate Mitogenomes

by Fonseca, Miguel M., Rocha, Sara, Posada, David
Published 2012

Origin and Length Distribution of Unidirectional Prokaryotic Overlapping Genes

by Fonseca, Miguel M., Harris, D. James, Posada, David
Published 2013

The Inversion of the Control Region in Three Mitogenomes Provides Further Evidence for an Asymmetric Model of Vertebrate mtDNA Replication

by Fonseca, Miguel M., Harris, D. James, Posada, David
Published 2014

The female and male mitochondrial genomes of Unio delphinus and the phylogeny of freshwater mussels (Bivalvia: Unionida)

by Fonseca, Miguel M., Lopes-Lima, Manuel, Eackles, Michael S., King, Tim L., Froufe, Elsa
Published in Mitochondrial DNA B Resour (2017)

The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression

by Melo-Ferreira, José, Vilela, Joana, Fonseca, Miguel M., da Fonseca, Rute R., Boursot, Pierre, Alves, Paulo C.
Published 2014

PseudoChecker: an integrated online platform for gene inactivation inference

by Alves, Luís Q, Ruivo, Raquel, Fonseca, Miguel M, Lopes-Marques, Mónica, Ribeiro, Pedro, Castro, L Filipe C
Published in Nucleic Acids Res (2020)

PhyloToL: A Taxon/Gene-Rich Phylogenomic Pipeline to Explore Genome Evolution of Diverse Eukaryotes

by Cerón-Romero, Mario A, Maurer-Alcalá, Xyrus X, Grattepanche, Jean-David, Yan, Ying, Fonseca, Miguel M, Katz, L A
Published in Mol Biol Evol (2019)

Genes for de novo biosynthesis of omega-3 polyunsaturated fatty acids are widespread in animals

by Kabeya, Naoki, Fonseca, Miguel M., Ferrier, David E. K., Navarro, Juan C., Bay, Line K., Francis, David S., Tocher, Douglas R., Castro, L. Filipe C., Monroig, Óscar
Published in Sci Adv (2018)

Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution

by Ren, Minglei, Feng, Xiaoyuan, Huang, Yongjie, Wang, Hui, Hu, Zhong, Clingenpeel, Scott, Swan, Brandon K., Fonseca, Miguel M., Posada, David, Stepanauskas, Ramunas, Hollibaugh, James T., Foster, Peter G., Woyke, Tanja, Luo, Haiwei
Published in ISME J (2019)

Complete Inactivation of Sebum-Producing Genes Parallels the Loss of Sebaceous Glands in Cetacea

by Lopes-Marques, Mónica, Machado, André M, Alves, Luís Q, Fonseca, Miguel M, Barbosa, Susana, Sinding, Mikkel-Holger S, Rasmussen, Marianne Helene, Iversen, Maria Refsgaard, Frost Bertelsen, Mads, Campos, Paula F, da Fonseca, Rute, Ruivo, Raquel, Castro, L Filipe C
Published in Mol Biol Evol (2019)

Mesozoic mitogenome rearrangements and freshwater mussel (Bivalvia: Unionoidea) macroevolution

by Froufe, Elsa, Bolotov, Ivan, Aldridge, David C., Bogan, Arthur E., Breton, Sophie, Gan, Han Ming, Kovitvadhi, Uthaiwan, Kovitvadhi, Satit, Riccardi, Nicoletta, Secci-Petretto, Giulia, Sousa, Ronaldo, Teixeira, Amilcar, Varandas, Simone, Zanatta, David, Zieritz, Alexandra, Fonseca, Miguel M., Lopes-Lima, Manuel
Published in Heredity (Edinb) (2019)

“Out of the Can”: A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus

by Machado, André M., Tørresen, Ole K., Kabeya, Naoki, Couto, Alvarina, Petersen, Bent, Felício, Mónica, Campos, Paula F., Fonseca, Elza, Bandarra, Narcisa, Lopes-Marques, Mónica, Ferraz, Renato, Ruivo, Raquel, Fonseca, Miguel M., Jentoft, Sissel, Monroig, Óscar, da Fonseca, Rute R., C. Castro, L. Filipe
Published in Genes (Basel) (2018)