Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics

le Caporaso, J Gregory, Smit, Sandra, Easton, Brett C, Hunter, Lawrence, Huttley, Gavin A, Knight, Rob
Foilsithe 2008

PyCogent: a toolkit for making sense from sequence

le Knight, Rob, Maxwell, Peter, Birmingham, Amanda, Carnes, Jason, Caporaso, J Gregory, Easton, Brett C, Eaton, Michael, Hamady, Micah, Lindsay, Helen, Liu, Zongzhi, Lozupone, Catherine, McDonald, Daniel, Robeson, Michael, Sammut, Raymond, Smit, Sandra, Wakefield, Matthew J, Widmann, Jeremy, Wikman, Shandy, Wilson, Stephanie, Ying, Hua, Huttley, Gavin A
Foilsithe 2007