A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

Por Ye, Yuzhen, Doak, Thomas G.
Publicado em 2009

Expanding the catalog of cas genes with metagenomes

Por Zhang, Quan, Doak, Thomas G., Ye, Yuzhen
Publicado em 2014

Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes

Por Wang, Mingjie, Doak, Thomas G., Ye, Yuzhen
Publicado no Genome Biol (2015)

Limited Mutation-Rate Variation Within the Paramecium aurelia Species Complex

Por Long, Hongan, Doak, Thomas G., Lynch, Michael
Publicado no G3 (Bethesda) (2018)

Telomere formation on macronuclear chromosomes of Oxytricha trifallax and O. fallax: alternatively processed regions have multiple telomere addition sites

Por Williams, Kevin R, Doak, Thomas G, Herrick, Glenn
Publicado em 2002

The gain and loss of chromosomal integron systems in the Treponema species

Por Wu, Yu-Wei, Doak, Thomas G, Ye, Yuzhen
Publicado em 2013

Strand-specific community RNA-seq reveals prevalent and dynamic antisense transcription in human gut microbiota

Por Bao, Guanhui, Wang, Mingjie, Doak, Thomas G., Ye, Yuzhen
Publicado no Front Microbiol (2015)

Genomic and Metagenomic Analysis of Diversity-Generating Retroelements Associated with Treponema denticola

Por Nimkulrat, Sutichot, Lee, Heewook, Doak, Thomas G., Ye, Yuzhen
Publicado no Front Microbiol (2016)

Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics

Por Wu, Yu-Wei, Rho, Mina, Doak, Thomas G., Ye, Yuzhen
Publicado em 2012

Oral Spirochetes Implicated in Dental Diseases Are Widespread in Normal Human Subjects and Carry Extremely Diverse Integron Gene Cassettes

Por Wu, Yu-Wei, Rho, Mina, Doak, Thomas G., Ye, Yuzhen
Publicado em 2012

Selection on the Genes of Euplotes crassus Tec1 and Tec2 Transposons: Evolutionary Appearance of a Programmed Frameshift in a Tec2 Gene Encoding a Tyrosine Family Site-Specific Rec...

Por Doak, Thomas G., Witherspoon, David J., Jahn, Carolyn L., Herrick, Glenn
Publicado em 2003

Bats Use Magnetite to Detect the Earth's Magnetic Field

Por Holland, Richard A., Kirschvink, Joseph L., Doak, Thomas G., Wikelski, Martin
Publicado em 2008

Spliced DNA Sequences in the Paramecium Germline: Their Properties and Evolutionary Potential

Por Catania, Francesco, McGrath, Casey L., Doak, Thomas G., Lynch, Michael
Publicado em 2013

CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes

Por Zhang, Quan, Rho, Mina, Tang, Haixu, Doak, Thomas G, Ye, Yuzhen
Publicado em 2013

Diverse CRISPRs Evolving in Human Microbiomes

Por Rho, Mina, Wu, Yu-Wei, Tang, Haixu, Doak, Thomas G., Ye, Yuzhen
Publicado em 2012

Drift-barrier hypothesis and mutation-rate evolution

Por Sung, Way, Ackerman, Matthew S., Miller, Samuel F., Doak, Thomas G., Lynch, Michael
Publicado em 2012

Reply to Massey: Drift does influence mutation-rate evolution

Por Sung, Way, Ackerman, Matthew S., Miller, Samuel F., Doak, Thomas G., Lynch, Michael
Publicado em 2013

A Genomic Survey of Reb Homologs Suggests Widespread Occurrence of R-Bodies in Proteobacteria

Por Raymann, Kasie, Bobay, Louis-Marie, Doak, Thomas G., Lynch, Michael, Gribaldo, Simonetta
Publicado em 2013

Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli

Por Lee, Heewook, Doak, Thomas G., Popodi, Ellen, Foster, Patricia L., Tang, Haixu
Publicado no Nucleic Acids Res (2016)

Insights into an Extensively Fragmented Eukaryotic Genome: De Novo Genome Sequencing of the Multinuclear Ciliate Uroleptopsis citrina

Por Zheng, Weibo, Wang, Chundi, Yan, Ying, Gao, Feng, Doak, Thomas G, Song, Weibo
Publicado no Genome Biol Evol (2018)