A new sequence logo plot to highlight enrichment and depletion

Yazar: Dey, Kushal K., Xie, Dongyue, Stephens, Matthew
Yayımlandı BMC Bioinformatics (2018)

Visualizing the structure of RNA-seq expression data using grade of membership models

Yazar: Dey, Kushal K., Hsiao, Chiaowen Joyce, Stephens, Matthew
Yayımlandı PLoS Genet (2017)

Correction: Visualizing the structure of RNA-seq expression data using grade of membership models

Yazar: Dey, Kushal K., Hsiao, Chiaowen Joyce, Stephens, Matthew
Yayımlandı PLoS Genet (2017)

Inference and visualization of DNA damage patterns using a grade of membership model

Yazar: Al-Asadi, Hussein, Dey, Kushal K, Novembre, John, Stephens, Matthew
Yayımlandı Bioinformatics (2019)

Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace’s Line

Yazar: White, Alexander E., Dey, Kushal K., Stephens, Matthew, Price, Trevor D.
Yayımlandı Glob Ecol Biogeogr (2021)

Regional influences on community structure across the tropical-temperate divide

Yazar: White, Alexander E., Dey, Kushal K., Mohan, Dhananjai, Stephens, Matthew, Price, Trevor D.
Yayımlandı Nat Commun (2019)

Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease

Yazar: Kim, Samuel S., Dey, Kushal K., Weissbrod, Omer, Márquez-Luna, Carla, Gazal, Steven, Price, Alkes L.
Yayımlandı Nat Commun (2020)

Evaluating the informativeness of deep learning annotations for human complex diseases

Yazar: Dey, Kushal K., van de Geijn, Bryce, Kim, Samuel Sungil, Hormozdiari, Farhad, Kelley, David R., Price, Alkes L.
Yayımlandı Nat Commun (2020)

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

Yazar: Hsiao, Chiaowen Joyce, Tung, PoYuan, Blischak, John D., Burnett, Jonathan E., Barr, Kenneth A., Dey, Kushal K., Stephens, Matthew, Gilad, Yoav
Yayımlandı Genome Res (2020)

Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements

Yazar: Amariuta, Tiffany, Ishigaki, Kazuyoshi, Sugishita, Hiroki, Ohta, Tazro, Koido, Masaru, Dey, Kushal K., Matsuda, Koichi, Murakami, Yoshinori, Price, Alkes L., Kawakami, Eiryo, Terao, Chikashi, Raychaudhuri, Soumya
Yayımlandı Nat Genet (2020)

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2

Yazar: Delorey, Toni M., Ziegler, Carly G. K., Heimberg, Graham, Normand, Rachelly, Yang, Yiming, Segerstolpe, Asa, Abbondanza, Domenic, Fleming, Stephen J., Subramanian, Ayshwarya, Montoro, Daniel T., Jagadeesh, Karthik A., Dey, Kushal K., Sen, Pritha, Slyper, Michal, Pita-Juárez, Yered H., Phillips, Devan, Bloom-Ackerman, Zohar, Barkas, Nick, Ganna, Andrea, Gomez, James, Normandin, Erica, Naderi, Pourya, Popov, Yury V., Raju, Siddharth S., Niezen, Sebastian, Tsai, Linus T.-Y., Siddle, Katherine J., Sud, Malika, Tran, Victoria M., Vellarikkal, Shamsudheen K., Amir-Zilberstein, Liat, Atri, Deepak S., Beechem, Joseph, Brook, Olga R., Chen, Jonathan, Divakar, Prajan, Dorceus, Phylicia, Engreitz, Jesse M., Essene, Adam, Fitzgerald, Donna M., Fropf, Robin, Gazal, Steven, Gould, Joshua, Grzyb, John, Harvey, Tyler, Hecht, Jonathan, Hether, Tyler, Jane-Valbuena, Judit, Leney-Greene, Michael, Ma, Hui, McCabe, Cristin, McLoughlin, Daniel E., Miller, Eric M., Muus, Christoph, Niemi, Mari, Padera, Robert, Pan, Liuliu, Pant, Deepti, Pe’er, Carmel, Pfiffner-Borges, Jenna, Pinto, Christopher J., Plaisted, Jacob, Reeves, Jason, Ross, Marty, Rudy, Melissa, Rueckert, Erroll H., Siciliano, Michelle, Sturm, Alexander, Todres, Ellen, Waghray, Avinash, Warren, Sarah, Zhang, Shuting, Zollinger, Daniel R., Cosimi, Lisa, Gupta, Rajat M., Hacohen, Nir, Hide, Winston, Price, Alkes L., Rajagopal, Jayaraj, Tata, Purushothama Rao, Riedel, Stefan, Szabo, Gyongyi, Tickle, Timothy L., Hung, Deborah, Sabeti, Pardis C., Novak, Richard, Rogers, Robert, Ingber, Donald E., Jiang, Z. Gordon, Juric, Dejan, Babadi, Mehrtash, Farhi, Samouil L., Stone, James R., Vlachos, Ioannis S., Solomon, Isaac H., Ashenberg, Orr, Porter, Caroline B.M., Li, Bo, Shalek, Alex K., Villani, Alexandra-Chloé, Rozenblatt-Rosen, Orit, Regev, Aviv
Yayımlandı bioRxiv (2021)