A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer

gan Vasighizaker, Akram, Sharma, Alok, Dehzangi, Abdollah
Cyhoeddwyd yn PLoS One (2019)

iDNAProt-ES: Identification of DNA-binding Proteins Using Evolutionary and Structural Features

gan Chowdhury, Shahana Yasmin, Shatabda, Swakkhar, Dehzangi, Abdollah
Cyhoeddwyd yn Sci Rep (2017)

PupStruct: Prediction of Pupylated Lysine Residues Using Structural Properties of Amino Acids

gan Singh, Vineet, Sharma, Alok, Dehzangi, Abdollah, Tsunoda, Tatushiko
Cyhoeddwyd yn Genes (Basel) (2020)

Improving protein fold recognition using the amalgamation of evolutionary-based and structural based information

gan Paliwal, Kuldip K, Sharma, Alok, Lyons, James, Dehzangi, Abdollah
Cyhoeddwyd yn BMC Bioinformatics (2014)

EvolStruct-Phogly: incorporating structural properties and evolutionary information from profile bigrams for the phosphoglycerylation prediction

gan Chandra, Abel Avitesh, Sharma, Alok, Dehzangi, Abdollah, Tsunoda, Tatushiko
Cyhoeddwyd yn BMC Genomics (2019)

RAM-PGK: Prediction of Lysine Phosphoglycerylation Based on Residue Adjacency Matrix

gan Chandra, Abel Avitesh, Sharma, Alok, Dehzangi, Abdollah, Tsunoda, Tatushiko
Cyhoeddwyd yn Genes (Basel) (2020)

Proposing a highly accurate protein structural class predictor using segmentation-based features

gan Dehzangi, Abdollah, Paliwal, Kuldip, Lyons, James, Sharma, Alok, Sattar, Abdul
Cyhoeddwyd 2014

SumSec: Accurate Prediction of Sumoylation Sites Using Predicted Secondary Structure

gan Dehzangi, Abdollah, López, Yosvany, Taherzadeh, Ghazaleh, Sharma, Alok, Tsunoda, Tatsuhiko
Cyhoeddwyd yn Molecules (2018)

Bigram-PGK: phosphoglycerylation prediction using the technique of bigram probabilities of position specific scoring matrix

gan Chandra, Abel, Sharma, Alok, Dehzangi, Abdollah, Shigemizu, Daichi, Tsunoda, Tatsuhiko
Cyhoeddwyd yn BMC Mol Cell Biol (2019)

A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition

gan Sharma, Alok, Paliwal, Kuldip K, Dehzangi, Abdollah, Lyons, James, Imoto, Seiya, Miyano, Satoru
Cyhoeddwyd 2013

PyFeat: a Python-based effective feature generation tool for DNA, RNA and protein sequences

gan Muhammod, Rafsanjani, Ahmed, Sajid, Md Farid, Dewan, Shatabda, Swakkhar, Sharma, Alok, Dehzangi, Abdollah
Cyhoeddwyd yn Bioinformatics (2019)

Evaluation of Sequence Features from Intrinsically Disordered Regions for the Estimation of Protein Function

gan Sharma, Alok, Dehzangi, Abdollah, Lyons, James, Imoto, Seiya, Miyano, Satoru, Nakai, Kenta, Patil, Ashwini
Cyhoeddwyd 2014

Gram-positive and gram-negative subcellular localization using rotation forest and physicochemical-based features

gan Dehzangi, Abdollah, Sohrabi, Sohrab, Heffernan, Rhys, Sharma, Alok, Lyons, James, Paliwal, Kuldip, Sattar, Abdul
Cyhoeddwyd yn BMC Bioinformatics (2015)

HMMBinder: DNA-Binding Protein Prediction Using HMM Profile Based Features

gan Zaman, Rianon, Chowdhury, Shahana Yasmin, Rashid, Mahmood A., Sharma, Alok, Dehzangi, Abdollah, Shatabda, Swakkhar
Cyhoeddwyd yn Biomed Res Int (2017)

GlyStruct: glycation prediction using structural properties of amino acid residues

gan Reddy, Hamendra Manhar, Sharma, Alok, Dehzangi, Abdollah, Shigemizu, Daichi, Chandra, Abel Avitesh, Tsunoda, Tatushiko
Cyhoeddwyd yn BMC Bioinformatics (2019)

Accurate prediction of RNA 5-hydroxymethylcytosine modification by utilizing novel position-specific gapped k-mer descriptors

gan Ahmed, Sajid, Hossain, Zahid, Uddin, Mahtab, Taherzadeh, Ghazaleh, Sharma, Alok, Shatabda, Swakkhar, Dehzangi, Abdollah
Cyhoeddwyd yn Comput Struct Biotechnol J (2020)

VIRMOTIF: A User-Friendly Tool for Viral Sequence Analysis

gan Rajaei, Pedram, Jahanian, Khadijeh Hoda, Beheshti, Amin, Band, Shahab S., Dehzangi, Abdollah, Alinejad-Rokny, Hamid
Cyhoeddwyd yn Genes (Basel) (2021)

Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction

gan López, Yosvany, Sharma, Alok, Dehzangi, Abdollah, Lal, Sunil Pranit, Taherzadeh, Ghazaleh, Sattar, Abdul, Tsunoda, Tatsuhiko
Cyhoeddwyd yn BMC Genomics (2018)

Improving succinylation prediction accuracy by incorporating the secondary structure via helix, strand and coil, and evolutionary information from profile bigrams

gan Dehzangi, Abdollah, López, Yosvany, Lal, Sunil Pranit, Taherzadeh, Ghazaleh, Sattar, Abdul, Tsunoda, Tatsuhiko, Sharma, Alok
Cyhoeddwyd yn PLoS One (2018)

PhoglyStruct: Prediction of phosphoglycerylated lysine residues using structural properties of amino acids

gan Chandra, Abel, Sharma, Alok, Dehzangi, Abdollah, Ranganathan, Shoba, Jokhan, Anjeela, Chou, Kuo-Chen, Tsunoda, Tatsuhiko
Cyhoeddwyd yn Sci Rep (2018)