Reconstruction of cell-type specific interactomes at single-cell resolution

ανά Mohammadi, Shahin, Davila-Velderrain, Jose, Kellis, Manolis
Τόπος έκδοσης Cell Syst (2019)

A multiresolution framework to characterize single-cell state landscapes

ανά Mohammadi, Shahin, Davila-Velderrain, Jose, Kellis, Manolis
Τόπος έκδοσης Nat Commun (2020)

Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates

ανά Davila-Velderrain, Jose, Villarreal, Carlos, Alvarez-Buylla, Elena R
Τόπος έκδοσης BMC Syst Biol (2015)

Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization

ανά Liu, Dianbo, Davila-Velderrain, Jose, Zhang, Zhizhuo, Kellis, Manolis
Τόπος έκδοσης Nucleic Acids Res (2019)

Modeling the epigenetic attractors landscape: toward a post-genomic mechanistic understanding of development

ανά Davila-Velderrain, Jose, Martinez-Garcia, Juan C., Alvarez-Buylla, Elena R.
Τόπος έκδοσης Front Genet (2015)

NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data

ανά He, Liang, Davila-Velderrain, Jose, Sumida, Tomokazu S., Hafler, David A., Kellis, Manolis, Kulminski, Alexander M.
Τόπος έκδοσης Commun Biol (2021)

In vivo and in vitro human gene essentiality estimations capture contrasting functional constraints

ανά Caldu-Primo, Jose Luis, Verduzco-Martínez, Jorge Armando, Alvarez-Buylla, Elena R, Davila-Velderrain, Jose
Τόπος έκδοσης NAR Genom Bioinform (2021)

Gene regulatory network underlying the immortalization of epithelial cells

ανά Méndez-López, Luis Fernando, Davila-Velderrain, Jose, Domínguez-Hüttinger, Elisa, Enríquez-Olguín, Christian, Martínez-García, Juan Carlos, Alvarez-Buylla, Elena R.
Τόπος έκδοσης BMC Syst Biol (2017)

Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble

ανά Marco, Asaf, Meharena, Hiruy S., Dileep, Vishnu, Raju, Ravikiran M., Davila-Velderrain, Jose, Zhang, Amy, Adaikkan, Chinnakkaruppan, Young, Jennie Z., Gao, Fan, Kellis, Manolis, Tsai, Li-Huei
Τόπος έκδοσης Nat Neurosci (2020)

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

ανά Menon, Madhvi, Mohammadi, Shahin, Davila-Velderrain, Jose, Goods, Brittany A., Cadwell, Tanina D., Xing, Yu, Stemmer-Rachamimov, Anat, Shalek, Alex K., Love, John Christopher, Kellis, Manolis, Hafler, Brian P.
Τόπος έκδοσης Nat Commun (2019)

Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation

ανά Lee, Hyeseung, Fenster, Robert J., Pineda, S. Sebastian, Gibbs, Whitney S., Mohammadi, Shahin, Davila-Velderrain, Jose, Garcia, Francisco J., Therrien, Martine, Novis, Hailey S., Gao, Fan, Wilkinson, Hilary, Vogt, Thomas, Kellis, Manolis, LaVoie, Matthew J., Heiman, Myriam
Τόπος έκδοσης Neuron (2020)

Single-cell transcriptomic analysis of Alzheimer’s disease

ανά Mathys, Hansruedi, Davila-Velderrain, Jose, Peng, Zhuyu, Gao, Fan, Mohammadi, Shahin, Young, Jennie Z., Menon, Madhvi, He, Liang, Abdurrob, Fatema, Jiang, Xueqiao, Martorell, Anthony J., Ransohoff, Richard M., Hafler, Brian P., Bennett, David A., Kellis, Manolis, Tsai, Li-Huei
Τόπος έκδοσης Nature (2019)

Reconstruction of the Human Blood-Brain Barrier in vitro reveals a Pathogenic Mechanism of APOE4 in Pericytes

ανά Blanchard, Joel W., Bula, Michael, Davila-Velderrain, Jose, Akay, Leyla Anne, Zhu, Lena, Frank, Alexander, Victor, Matheus B., Bonner, Julia Maeve, Mathys, Hansruedi, Lin, Yuan-Ta, Ko, Tak, Bennett, David A., Cam, Hugh P., Kellis, Manolis, Tsai, Li-Huei
Τόπος έκδοσης Nat Med (2020)

Inferring multimodal latent topics from electronic health records

ανά Li, Yue, Nair, Pratheeksha, Lu, Xing Han, Wen, Zhi, Wang, Yuening, Dehaghi, Amir Ardalan Kalantari, Miao, Yan, Liu, Weiqi, Ordog, Tamas, Biernacka, Joanna M., Ryu, Euijung, Olson, Janet E., Frye, Mark A., Liu, Aihua, Guo, Liming, Marelli, Ariane, Ahuja, Yuri, Davila-Velderrain, Jose, Kellis, Manolis
Τόπος έκδοσης Nat Commun (2020)

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

ανά Liu, Mengzhen, Jiang, Yu, Wedow, Robbee, Li, Yue, Brazel, David M., Chen, Fang, Datta, Gargi, Davila-Velderrain, Jose, McGuire, Daniel, Tian, Chao, Zhan, Xiaowei, Choquet, Hélène, Docherty, Anna R., Faul, Jessica D., Foerster, Johanna R., Fritsche, Lars G., Gabrielsen, Maiken Elvestad, Gordon, Scott D., Haessler, Jeffrey, Hottenga, Jouke-Jan, Huang, Hongyan, Jang, Seon-Kyeong, Jansen, Philip R., Ling, Yueh, Mägi, Reedik, Matoba, Nana, McMahon, George, Mulas, Antonella, Orrù, Valeria, Palviainen, Teemu, Pandit, Anita, Reginsson, Gunnar W., Skogholt, Anne Heidi, Smith, Jennifer A., Taylor, Amy E., Turman, Constance, Willemsen, Gonneke, Young, Hannah, Young, Kendra A., Zajac, Gregory J. M., Zhao, Wei, Zhou, Wei, Bjornsdottir, Gyda, Boardman, Jason D., Boehnke, Michael, Boomsma, Dorret I., Chen, Chu, Cucca, Francesco, Davies, Gareth E., Eaton, Charles B., Ehringer, Marissa A., Esko, Tõnu, Fiorillo, Edoardo, Gillespie, Nathan A., Gudbjartsson, Daniel F., Haller, Toomas, Harris, Kathleen Mullan, Heath, Andrew C., Hewitt, John K., Hickie, Ian B., Hokanson, John E., Hopfer, Christian J., Hunter, David J., Iacono, William G., Johnson, Eric O., Kamatani, Yoichiro, Kardia, Sharon L. R., Keller, Matthew C., Kellis, Manolis, Kooperberg, Charles, Kraft, Peter, Krauter, Kenneth S., Laakso, Markku, Lind, Penelope A., Loukola, Anu, Lutz, Sharon M., Madden, Pamela A. F., Martin, Nicholas G., McGue, Matt, McQueen, Matthew B., Medland, Sarah E., Metspalu, Andres, Mohlke, Karen L., Nielsen, Jonas B., Okada, Yukinori, Peters, Ulrike, Polderman, Tinca J. C., Posthuma, Danielle, Reiner, Alexander P., Rice, John P., Rimm, Eric, Rose, Richard J., Runarsdottir, Valgerdur, Stallings, Michael C., Stančáková, Alena, Stefansson, Hreinn, Thai, Khanh K., Tindle, Hilary A., Tyrfingsson, Thorarinn, Wall, Tamara L., Weir, David R., Weisner, Constance, Whitfield, John B., Winsvold, Bendik Slagsvold, Yin, Jie, Zuccolo, Luisa, Bierut, Laura J., Hveem, Kristian, Lee, James J., Munafo, Marcus R., Saccone, Nancy L., Willer, Cristen J., Cornelis, Marilyn C., David, Sean P., Hinds, David, Jorgenson, Eric, Kaprio, Jaakko, Stitzel, Jerry A., Stefansson, Kari, Thorgeirsson, Thorgeir E., Abecasis, Goncalo, Liu, Dajiang J., Vrieze, Scott
Τόπος έκδοσης Nat Genet (2019)