Sequence features responsible for intron retention in human

by Sakabe, Noboru Jo, de Souza, Sandro José
Published 2007

Intron positions correlate with module boundaries in ancient proteins

by de Souza, Sandro Jose, Long, Manyuan, Schoenbach, Lloyd, Roy, Scott William, Gilbert, Walter
Published 1996

Detection and evaluation of intron retention events in the human transcriptome

by GALANTE, PEDRO ALEXANDRE FAVORETTO, SAKABE, NOBORU JO, KIRSCHBAUM-SLAGER, NATANJA, DE SOUZA, SANDRO JOSÉ
Published 2004

Uncovering association networks through an eQTL analysis involving human miRNAs and lincRNAs

by Branco, Paulo R., de Araújo, Gilderlanio S., Barrera, Júnior, Suarez-Kurtz, Guilherme, de Souza, Sandro José
Published in Sci Rep (2018)

Sex‐biased gene expression in the frontal cortex of common marmosets (Callithrix jacchus) and potential behavioral correlates

by Nogueira, Viviane Brito, Imparato, Danilo Oliveira, de Souza, Sandro José, de Sousa, Maria Bernardete Cordeiro
Published in Brain Behav (2018)

AMIN domains have a predicted role in localization of diverse periplasmic protein complexes

by de Souza, Robson Francisco, Anantharaman, Vivek, de Souza, Sandro José, Aravind, L., Gueiros-Filho, Frederico J.
Published 2008

A comprehensive in silico expression analysis of RNA binding proteins in normal and tumor tissue: Identification of potential players in tumor formation

by Galante, Pedro A.F., Sandhu, Devraj, de Sousa Abreu, Raquel, Gradassi, Michael, Slager, Natanja, Vogel, Christine, de Souza, Sandro Jose, Penalva, Luiz O.F.
Published 2009

On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics

by Machado, Karla C. T., Fortuin, Suereta, Tomazella, Gisele Guicardi, Fonseca, Andre F., Warren, Robin Mark, Wiker, Harald G., de Souza, Sandro Jose, de Souza, Gustavo Antonio
Published in Front Microbiol (2019)

The Human Cell Surfaceome of Breast Tumors

by da Cunha, Júlia Pinheiro Chagas, Galante, Pedro Alexandre Favoretto, de Souza, Jorge Estefano Santana, Pieprzyk, Martin, Carraro, Dirce Maria, Old, Lloyd J., Camargo, Anamaria Aranha, de Souza, Sandro José
Published 2013

Influence of BRCA1 Germline Mutations in the Somatic Mutational Burden of Triple-Negative Breast Cancer

by Ferreira, Elisa Napolitano, Brianese, Rafael Canfield, de Almeida, Renan Valieris Bueno, Drummond, Rodrigo Duarte, de Souza, Jorge Estefano, da Silva, Israel Tojal, de Souza, Sandro José, Carraro, Dirce Maria
Published in Transl Oncol (2019)

SurfaceomeDB: a cancer-orientated database for genes encoding cell surface proteins

by de Souza, Jorge Estefano Santana, Galante, Pedro Alexandre Favoretto, de Almeida, Renan Valieris Bueno, da Cunha, Julia Pinheiro Chagas, Ohara, Daniel Takatori, Ohno-Machado, Lucila, Old, Lloyd J., de Souza, Sandro José
Published 2012

Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis

by da Silva, Vandeclecio Lira, Fonseca, André Faustino, Fonseca, Marbella, da Silva, Thayna Emilia, Coelho, Ana Carolina, Kroll, José Eduardo, de Souza, Jorge Estefano Santana, Stransky, Beatriz, de Souza, Gustavo Antonio, de Souza, Sandro José
Published in Oncotarget (2017)

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms

by Tanino, Motohiko, Debily, Marie-Anne, Tamura, Takuro, Hishiki, Teruyoshi, Ogasawara, Osamu, Murakawa, Katsuji, Kawamoto, Shoko, Itoh, Kouichi, Watanabe, Shinya, de Souza, Sandro José, Imbeaud, Sandrine, Graudens, Esther, Eveno, Eric, Hilton, Phillip, Sudo, Yukio, Kelso, Janet, Ikeo, Kazuho, Imanishi, Tadashi, Gojobori, Takashi, Auffray, Charles, Hide, Winston, Okubo, Kousaku
Published 2005

A genomic case study of desmoplastic small round cell tumor: comprehensive analysis reveals insights into potential therapeutic targets and development of a monitoring tool for a r...

by Ferreira, Elisa Napolitano, Barros, Bruna Durães Figueiredo, de Souza, Jorge Estefano, Almeida, Renan Valieris, Torrezan, Giovana Tardin, Garcia, Sheila, Krepischi, Ana Cristina Victorino, Mello, Celso Abdon Lopes de, Cunha, Isabela Werneck da, Pinto, Clóvis Antonio Lopes, Soares, Fernando Augusto, Dias-Neto, Emmanuel, Lopes, Ademar, de Souza, Sandro José, Carraro, Dirce Maria
Published in Hum Genomics (2016)

Identification of Variants (rs11571707, rs144848, and rs11571769) in the BRCA2 Gene Associated with Hereditary Breast Cancer in Indigenous Populations of the Brazilian Amazon

by Dobbin, Elizabeth Ayres Fragoso, Medeiros, Jéssyca Amanda Gomes, Costa, Marta Solange Camarinha Ramos, Rodrigues, Juliana Carla Gomes, Guerreiro, João Farias, Kroll, José Eduardo, de Souza, Sandro José, de Assumpção, Paulo Pimentel, Ribeiro-dos-Santos, Ândrea, dos Santos, Sidney Emanuel Batista, Burbano, Rommel Mario Rodríguez, Fernandes, Marianne Rodrigues, dos Santos, Ney Pereira Carneiro
Published in Genes (Basel) (2021)

Whole Genome Sequencing of the Pirarucu (Arapaima gigas) Supports Independent Emergence of Major Teleost Clades

by Vialle, Ricardo Assunção, de Souza, Jorge Estefano Santana, Lopes, Katia de Paiva, Teixeira, Diego Gomes, Alves Sobrinho, Pitágoras de Azevedo, Ribeiro-dos-Santos, André M, Furtado, Carolina, Sakamoto, Tetsu, Oliveira Silva, Fábio Augusto, Herculano Corrêa de Oliveira, Edivaldo, Hamoy, Igor Guerreiro, Assumpção, Paulo Pimentel, Ribeiro-dos-Santos, Ândrea, Santos Lima, João Paulo Matos, Seuánez, Héctor N, de Souza, Sandro José, Santos, Sidney
Published in Genome Biol Evol (2018)

Identification of NUDT15 gene variants in Amazonian Amerindians and admixed individuals from northern Brazil

by Rodrigues, Juliana Carla Gomes, de Souza, Tatiane Piedade, Pastana, Lucas Favacho, Ribeiro dos Santos, André Maurício, Fernandes, Marianne Rodrigues, Pinto, Pablo, Wanderley, Alayde Vieira, de Souza, Sandro José, Kroll, José Eduardo, Pereira, Adenilson Leão, Magalhães, Leandro, Mercês, Laís Reis das, Vidal, Amanda Ferreira, Vinasco-Sandoval, Tatiana, Cavalcante, Giovanna Chaves, Guerreiro, João Farias, de Assumpção, Paulo Pimentel, Ribeiro-dos-Santos, Ândrea, Santos, Sidney, dos Santos, Ney Pereira Carneiro
Published in PLoS One (2020)