Phase variation and microevolution at homopolymeric tracts in <it>Bordetella pertussis</it>

per Cummings Craig A, Gogol Emily B, Burns Ryan C, Relman David A
Publicat 2007-05-01

Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis

per Gogol, Emily B, Cummings, Craig A, Burns, Ryan C, Relman, David A
Publicat 2007

Transcriptional Profiling of the Iron Starvation Response in Bordetella pertussis Provides New Insights into Siderophore Utilization and Virulence Gene Expression

per Brickman, Timothy J., Cummings, Craig A., Liew, Sin-Yee, Relman, David A., Armstrong, Sandra K.
Publicat 2011

Significant Gene Order and Expression Differences in Bordetella pertussis Despite Limited Gene Content Variation

per Brinig, Mary M., Cummings, Craig A., Sanden, Gary N., Stefanelli, Paola, Lawrence, Andrew, Relman, David A.
Publicat 2006

Growth Phase- and Nutrient Limitation-Associated Transcript Abundance Regulation in Bordetella pertussis

per Nakamura, Mari M., Liew, Sin-Yee, Cummings, Craig A., Brinig, Mary M., Dieterich, Christine, Relman, David A.
Publicat 2006

Bordetella pertussis, the Causative Agent of Whooping Cough, Evolved from a Distinct, Human-Associated Lineage of B. bronchiseptica

per Diavatopoulos, Dimitri A, Cummings, Craig A, Schouls, Leo M, Brinig, Mary M, Relman, David A, Mooi, Frits R
Publicat 2005

Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States

per Rodriguez-Rivera, Lorraine D, Moreno Switt, Andrea I, Degoricija, Lovorka, Fang, Rixun, Cummings, Craig A, Furtado, Manohar R, Wiedmann, Martin, den Bakker, Henk C
Publicat 2014

Comparative genomics of the bacterial genus <it>Listeria</it>: Genome evolution is characterized by limited gene acquisition and limited gene loss

per Barker Melissa, Degoricija Lovorka, Orsi Renato H, Vatta Paolo, Ferreira Vania, Cummings Craig A, den Bakker Henk C, Petrauskene Olga, Furtado Manohar R, Wiedmann Martin
Publicat 2010-12-01

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

per den Bakker, Henk C, Cummings, Craig A, Ferreira, Vania, Vatta, Paolo, Orsi, Renato H, Degoricija, Lovorka, Barker, Melissa, Petrauskene, Olga, Furtado, Manohar R, Wiedmann, Martin
Publicat 2010

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica

per den Bakker, Henk C, Moreno Switt, Andrea I, Govoni, Gregory, Cummings, Craig A, Ranieri, Matthew L, Degoricija, Lovorka, Hoelzer, Karin, Rodriguez-Rivera, Lorraine D, Brown, Stephanie, Bolchacova, Elena, Furtado, Manohar R, Wiedmann, Martin
Publicat 2011

Identification and Characterization of Novel Salmonella Mobile Elements Involved in the Dissemination of Genes Linked to Virulence and Transmission

per Moreno Switt, Andrea I., den Bakker, Henk C., Cummings, Craig A., Rodriguez-Rivera, Lorraine D., Govoni, Gregory, Raneiri, Matthew L., Degoricija, Lovorka, Brown, Stephanie, Hoelzer, Karin, Peters, Joseph E., Bolchacova, Elena, Furtado, Manohar R., Wiedmann, Martin
Publicat 2012

Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing

per Cummings, Craig A, Bormann Chung, Christina A, Fang, Rixun, Barker, Melissa, Brzoska, Pius, Williamson, Phillip C, Beaudry, Jodi, Matthews, Molly, Schupp, James, Wagner, David M, Birdsell, Dawn, Vogler, Amy J, Furtado, Manohar R, Keim, Paul, Budowle, Bruce
Publicat 2010

Comparative Analysis of Genome Sequences Covering the Seven Cronobacter Species

per Joseph, Susan, Desai, Prerak, Ji, Yongmei, Cummings, Craig A., Shih, Rita, Degoricija, Lovorka, Rico, Alain, Brzoska, Pius, Hamby, Stephen E., Masood, Naqash, Hariri, Sumyya, Sonbol, Hana, Chuzhanova, Nadia, McClelland, Michael, Furtado, Manohar R., Forsythe, Stephen J.
Publicat 2012

Escherichia coli Serotype O55:H7 Diversity Supports Parallel Acquisition of Bacteriophage at Shiga Toxin Phage Insertion Sites during Evolution of the O157:H7 Lineage

per Kyle, Jennifer L., Cummings, Craig A., Parker, Craig T., Quiñones, Beatriz, Vatta, Paolo, Newton, Elizabeth, Huynh, Steven, Swimley, Michelle, Degoricija, Lovorka, Barker, Melissa, Fontanoz, Samar, Nguyen, Kimberly, Patel, Ronak, Fang, Rixun, Tebbs, Robert, Petrauskene, Olga, Furtado, Manohar, Mandrell, Robert E.
Publicat 2012

Molecular Characterization of the Predominant Influenza A(H1N1)pdm09 Virus in Mexico, December 2011–February 2012

per de la Rosa-Zamboni, Daniela, Vázquez-Pérez, Joel A., Ávila-Ríos, Santiago, Carranco-Arenas, Ana Paola, Ormsby, Christopher E., Cummings, Craig A., Soto-Nava, Maribel, Hernández-Hernández, Víctor A., Orozco-Sánchez, Carmen O., la Barrera, Claudia Alvarado-de, Pérez-Padilla, Rogelio, Reyes-Terán, Gustavo
Publicat 2012

A Whole-Genome Single Nucleotide Polymorphism-Based Approach To Trace and Identify Outbreaks Linked to a Common Salmonella enterica subsp. enterica Serovar Montevideo Pulsed-Field...

per den Bakker, Henk C., Moreno Switt, Andrea I., Cummings, Craig A., Hoelzer, Karin, Degoricija, Lovorka, Rodriguez-Rivera, Lorraine D., Wright, Emily M., Fang, Rixun, Davis, Margaret, Root, Tim, Schoonmaker-Bopp, Dianna, Musser, Kimberlee A., Villamil, Elizabeth, Waechter, HaeNa, Kornstein, Laura, Furtado, Manohar R., Wiedmann, Martin
Publicat 2011

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

per Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
Publicat a PLoS One (2015)

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

per Mellmann, Alexander, Harmsen, Dag, Cummings, Craig A., Zentz, Emily B., Leopold, Shana R., Rico, Alain, Prior, Karola, Szczepanowski, Rafael, Ji, Yongmei, Zhang, Wenlan, McLaughlin, Stephen F., Henkhaus, John K., Leopold, Benjamin, Bielaszewska, Martina, Prager, Rita, Brzoska, Pius M., Moore, Richard L., Guenther, Simone, Rothberg, Jonathan M., Karch, Helge
Publicat 2011