SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

Por Cox, Murray P, Peterson, Daniel A, Biggs, Patrick J
Publicado em 2010

High Throughput Genome-Wide Survey of Small RNAs from the Parasitic Protists Giardia intestinalis and Trichomonas vaginalis

Por Chen, Xiaowei (Sylvia), Collins, Lesley J., Biggs, Patrick J., Penny, David
Publicado em 2009

De novo sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)

Por Miller, Hilary C, Biggs, Patrick J, Voelckel, Claudia, Nelson, Nicola J
Publicado em 2012

Isolation and characterization of microsatellite loci from Arthropodium cirratum (Asparagaceae)(1)

Por Bulgarella, Mariana, Biggs, Patrick J., de Lange, Peter J., Shepherd, Lara D.
Publicado no Appl Plant Sci (2017)

Index-Free De Novo Assembly and Deconvolution of Mixed Mitochondrial Genomes

Por McComish, Bennet J., Hills, Simon F. K., Biggs, Patrick J., Penny, David
Publicado em 2010

Sticky Genomes: Using NGS Evidence to Test Hybrid Speciation Hypotheses

Por Morgan-Richards, Mary, Hills, Simon F. K., Biggs, Patrick J., Trewick, Steven A.
Publicado no PLoS One (2016)

Complete Genome Sequence of a Legionella longbeachae Serogroup 1 Strain Isolated from a Patient with Legionnaires’ Disease

Por Slow, Sandy, Anderson, Trevor, Miller, James, Singh, Siddharth, Murdoch, David, Biggs, Patrick J.
Publicado no Genome Announc (2017)

Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer

Por Purcell, Rachel V., Visnovska, Martina, Biggs, Patrick J., Schmeier, Sebastian, Frizelle, Frank A.
Publicado no Sci Rep (2017)

Draft Genome Sequences of Three Strains of Geobacillus stearothermophilus Isolated from a Milk Powder Manufacturing Plant

Por Burgess, Sara A., Cox, Murray P., Flint, Steve H., Lindsay, Denise, Biggs, Patrick J.
Publicado no Genome Announc (2015)

Inferring Ancestral Recombination Graphs from Bacterial Genomic Data

Por Vaughan, Timothy G., Welch, David, Drummond, Alexei J., Biggs, Patrick J., George, Tessy, French, Nigel P.
Publicado no Genetics (2017)

Mutational Dynamics of Aroid Chloroplast Genomes

Por Ahmed, Ibrar, Biggs, Patrick J., Matthews, Peter J., Collins, Lesley J., Hendy, Michael D., Lockhart, Peter J.
Publicado em 2012

Culture independent analysis using gnd as a target gene to assess Escherichia coli diversity and community structure

Por Cookson, Adrian L., Biggs, Patrick J., Marshall, Jonathan C., Reynolds, Angela, Collis, Rose M., French, Nigel P., Brightwell, Gale
Publicado no Sci Rep (2017)

Complete Genome Sequence of Campylobacter concisus ATCC 33237(T) and Draft Genome Sequences for an Additional Eight Well-Characterized C. concisus Strains

Por Cornelius, Angela J., Miller, William G., Lastovica, Albert J., On, Stephen L. W., French, Nigel P., Vandenberg, Olivier, Biggs, Patrick J.
Publicado no Genome Announc (2017)

Systematic Error in Seed Plant Phylogenomics

Por Zhong, Bojian, Deusch, Oliver, Goremykin, Vadim V., Penny, David, Biggs, Patrick J., Atherton, Robin A., Nikiforova, Svetlana V., Lockhart, Peter James
Publicado em 2011

Biochar in Co-Contaminated Soil Manipulates Arsenic Solubility and Microbiological Community Structure, and Promotes Organochlorine Degradation

Por Gregory, Samuel J., Anderson, Christopher W. N., Camps-Arbestain, Marta, Biggs, Patrick J., Ganley, Austen R. D., O’Sullivan, Justin M., McManus, Michael T.
Publicado no PLoS One (2015)

Whole-Genome Comparison of Two Campylobacter jejuni Isolates of the Same Sequence Type Reveals Multiple Loci of Different Ancestral Lineage

Por Biggs, Patrick J., Fearnhead, Paul, Hotter, Grant, Mohan, Vathsala, Collins-Emerson, Julie, Kwan, Errol, Besser, Thomas E., Cookson, Adrian, Carter, Philip E., French, Nigel P.
Publicado em 2011

Genomic Analysis of Salmonella enterica Serovar Typhimurium DT160 Associated with a 14-Year Outbreak, New Zealand, 1998–2012

Por Bloomfield, Samuel J., Benschop, Jackie, Biggs, Patrick J., Marshall, Jonathan C., Hayman, David T.S., Carter, Philip E., Midwinter, Anne C., Mather, Alison E., French, Nigel P.
Publicado no Emerg Infect Dis (2017)

Updating the genomic taxonomy and epidemiology of Campylobacter hyointestinalis

Por Wilkinson, David A., O’Donnell, Andrew J., Akhter, Rukhshana N., Fayaz, Ahmed, Mack, Hamish J., Rogers, Lynn E., Biggs, Patrick J., French, Nigel P., Midwinter, Anne C.
Publicado no Sci Rep (2018)

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling

Por Lindgreen, Stinus, Umu, Sinan Uğur, Lai, Alicia Sook-Wei, Eldai, Hisham, Liu, Wenting, McGimpsey, Stephanie, Wheeler, Nicole E., Biggs, Patrick J., Thomson, Nick R., Barquist, Lars, Poole, Anthony M., Gardner, Paul P.
Publicado em 2014

Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association

Por Strachan, Norval J. C., Rotariu, Ovidiu, Lopes, Bruno, MacRae, Marion, Fairley, Susan, Laing, Chad, Gannon, Victor, Allison, Lesley J., Hanson, Mary F., Dallman, Tim, Ashton, Philip, Franz, Eelco, van Hoek, Angela H. A. M., French, Nigel P., George, Tessy, Biggs, Patrick J., Forbes, Ken J.
Publicado no Sci Rep (2015)