Top-down analysis of temporal hierarchy in biochemical reaction networks.

Por Neema Jamshidi, Bernhard Ø Palsson
Publicado em 2008-01-01

Reconstruction and Validation of a Genome-Scale Metabolic Model of Streptococcus oralis (iCJ415), a Human Commensal and Opportunistic Pathogen

Por Christian S. Jensen, Charles J. Norsigian, Xin Fang, Xiaohui C. Nielsen, Jens Jørgen Christensen, Jens Jørgen Christensen, Bernhard O. Palsson, Bernhard O. Palsson, Jonathan M. Monk
Publicado em 2020-03-01

Drug off-target effects predicted using structural analysis in the context of a metabolic network model.

Por Roger L Chang, Li Xie, Lei Xie, Philip E Bourne, Bernhard Ø Palsson
Publicado em 2010-09-01

Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient

Por Xin Fang, Jonathan M. Monk, Sergey Nurk, Margarita Akseshina, Qiyun Zhu, Christopher Gemmell, Connor Gianetto-Hill, Nelly Leung, Richard Szubin, Jon Sanders, Paul L. Beck, Weizhong Li, Weizhong Li, William J. Sandborn, William J. Sandborn, Scott D. Gray-Owen, Rob Knight, Rob Knight, Rob Knight, Emma Allen-Vercoe, Bernhard O. Palsson, Bernhard O. Palsson, Bernhard O. Palsson, Bernhard O. Palsson, Larry Smarr, Larry Smarr, Larry Smarr
Publicado em 2018-10-01

Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage.

Por Ines Thiele, Ronan M T Fleming, Richard Que, Aarash Bordbar, Dinh Diep, Bernhard O Palsson
Publicado em 2012-01-01

Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes

Por Nathan Mih, Jonathan M. Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O. Palsson
Publicado em 2020-04-01

Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection

Por Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O. Palsson, Anand Sastry
Publicado em 2022-04-01

Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity

Por Patrick V. Phaneuf, James T. Yurkovich, David Heckmann, Muyao Wu, Troy E. Sandberg, Zachary A. King, Justin Tan, Bernhard O. Palsson, Adam M. Feist
Publicado em 2020-07-01

Technologies and approaches to elucidate and model the virulence program of Salmonella

Por Jason E Mcdermott, Hyunjin eYoon, Ernesto S Nakayasu, Thomas O Metz, Daniel eHyduke, Afshan S Kidwai, Bernhard O Palsson, Joshua N Adkins, Fred eHeffron
Publicado em 2011-06-01

A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

Por Irina A. Rodionova, Ye Gao, Jonathan Monk, Ying Hefner, Nicholas Wong, Richard Szubin, Hyun Gyu Lim, Dmitry A. Rodionov, Zhongge Zhang, Milton H. Saier, Bernhard O. Palsson
Publicado em 2022-05-01

Genome-Scale Metabolic Model of Xanthomonas phaseoli pv. manihotis: An Approach to Elucidate Pathogenicity at the Metabolic Level

Por David Botero, David Botero, David Botero, David Botero, Jonathan Monk, María Juliana Rodríguez Cubillos, María Juliana Rodríguez Cubillos, Andrés Rodríguez Cubillos, Mariana Restrepo, Vivian Bernal-Galeano, Alejandro Reyes, Alejandro Reyes, Andrés González Barrios, Bernhard Ø. Palsson, Silvia Restrepo, Adriana Bernal
Publicado em 2020-08-01