Decoding Cellular Dynamics in Epidermal Growth Factor Signaling Using a New Pathway-Based Integration Approach for Proteomics and Transcriptomics Data

by Wachter, Astrid, Beißbarth, Tim
Published in Front Genet (2016)

Sequential interim analyses of survival data in DNA microarray experiments

by Leha, Andreas, Beißbarth, Tim, Jung, Klaus
Published 2011

Reporting FDR analogous confidence intervals for the log fold change of differentially expressed genes

by Jung, Klaus, Friede, Tim, Beißbarth, Tim
Published 2011

A new analysis approach of epidermal growth factor receptor pathway activation patterns provides insights into cetuximab resistance mechanisms in head and neck cancer

by von der Heyde, Silvia, Beissbarth, Tim
Published 2012

R-Based Software for the Integration of Pathway Data into Bioinformatic Algorithms

by Kramer, Frank, Bayerlová, Michaela, Beißbarth, Tim
Published 2014

GOSim – an R-package for computation of information theoretic GO similarities between terms and gene products

by Fröhlich, Holger, Speer, Nora, Poustka, Annemarie, Beißbarth, Tim
Published 2007

Detection of Simultaneous Group Effects in MicroRNA Expression and Related Target Gene Sets

by Artmann, Stephan, Jung, Klaus, Bleckmann, Annalen, Beißbarth, Tim
Published 2012

Analysis of Reverse Phase Protein Array Data: From Experimental Design towards Targeted Biomarker Discovery

by Wachter, Astrid, Bernhardt, Stephan, Beissbarth, Tim, Korf, Ulrike
Published in Microarrays (Basel) (2015)

Deterministic Effects Propagation Networks for reconstructing protein signaling networks from multiple interventions

by Bender Christian, Arlt Dorit, Sahin Özgür, Fröhlich Holger, Beißbarth Tim
Published 2009-10-01

Large scale statistical inference of signaling pathways from RNAi and microarray data

by Froehlich, Holger, Fellmann, Mark, Sueltmann, Holger, Poustka, Annemarie, Beissbarth, Tim
Published 2007

Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data

by Fröhlich, Holger, Fellmann, Mark, Sültmann, Holger, Poustka, Annemarie, Beissbarth, Tim
Published 2008

Predicting pathway membership via domain signatures

by Fröhlich, Holger, Fellmann, Mark, Sültmann, Holger, Poustka, Annemarie, Beißbarth, Tim
Published 2008

Deterministic Effects Propagation Networks for reconstructing protein signaling networks from multiple interventions

by Fröhlich, Holger, Sahin, Özgür, Arlt, Dorit, Bender, Christian, Beißbarth, Tim
Published 2009

A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells

by Wolff, Alexander, Bayerlová, Michaela, Gaedcke, Jochen, Kube, Dieter, Beißbarth, Tim
Published in PLoS One (2018)

Correction: A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells

by Wolff, Alexander, Bayerlová, Michaela, Gaedcke, Jochen, Kube, Dieter, Beißbarth, Tim
Published in PLoS One (2019)

Constructing temporal regulatory cascades in the context of development and cell differentiation

by Daou, Rayan, Beißbarth, Tim, Wingender, Edgar, Gültas, Mehmet, Haubrock, Martin
Published in PLoS One (2020)

IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme

by Kalya, Manasa, Kel, Alexander, Wlochowitz, Darius, Wingender, Edgar, Beißbarth, Tim
Published in Front Genet (2021)

Wnt/β-catenin signaling integrates patterning and metabolism of the insect growth zone

by Oberhofer, Georg, Grossmann, Daniela, Siemanowski, Janna L., Beissbarth, Tim, Bucher, Gregor
Published in Development (2014)

Extending pathways based on gene lists using InterPro domain signatures

by Hahne, Florian, Mehrle, Alexander, Arlt, Dorit, Poustka, Annemarie, Wiemann, Stefan, Beissbarth, Tim
Published 2008

Dynamic deterministic effects propagation networks: learning signalling pathways from longitudinal protein array data

by Bender, Christian, Henjes, Frauke, Fröhlich, Holger, Wiemann, Stefan, Korf, Ulrike, Beißbarth, Tim
Published 2010