Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species

gan Thorpe, Harry A., Bayliss, Sion C., Hurst, Laurence D., Feil, Edward J.
Cyhoeddwyd yn Genetics (2017)

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

gan Thorpe, Harry A, Bayliss, Sion C, Sheppard, Samuel K, Feil, Edward J
Cyhoeddwyd yn Gigascience (2018)

Patterns of cross‐resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials

gan Colclough, Abigail, Corander, Jukka, Sheppard, Samuel K., Bayliss, Sion C., Vos, Michiel
Cyhoeddwyd yn Evol Appl (2019)

The use of Oxford Nanopore native barcoding for complete genome assembly

gan Bayliss, Sion C, Hunt, Vicky L, Yokoyama, Maho, Thorpe, Harry A, Feil, Edward J
Cyhoeddwyd yn Gigascience (2017)

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

gan Bayliss, Sion C, Thorpe, Harry A, Coyle, Nicola M, Sheppard, Samuel K, Feil, Edward J
Cyhoeddwyd yn Gigascience (2019)

Draft Genome Sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. val...

gan López-Hermoso, Clara, de la Haba, Rafael R., Sánchez-Porro, Cristina, Bayliss, Sion C., Feil, Edward J., Ventosa, Antonio
Cyhoeddwyd yn Genome Announc (2017)

The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens

gan Bayliss, Sion C., Verner-Jeffreys, David W., Bartie, Kerry L., Aanensen, David M., Sheppard, Samuel K., Adams, Alexandra, Feil, Edward J.
Cyhoeddwyd yn Front Microbiol (2017)

Bayesian identification of bacterial strains from sequencing data

gan Sankar, Aravind, Malone, Brandon, Bayliss, Sion C., Pascoe, Ben, Méric, Guillaume, Hitchings, Matthew D., Sheppard, Samuel K., Feil, Edward J., Corander, Jukka, Honkela, Antti
Cyhoeddwyd yn Microb Genom (2016)

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry

gan Bayliss, Sion C., Verner-Jeffreys, David W., Ryder, David, Suarez, Rudy, Ramirez, Roxana, Romero, Jaime, Pascoe, Ben, Sheppard, Sam K., Godoy, Marcos, Feil, Edward J.
Cyhoeddwyd yn Microb Genom (2018)

A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum

gan Coyle, Nicola M., Bartie, Kerry L., Bayliss, Sion C., Bekaert, Michaël, Adams, Alexandra, McMillan, Stuart, Verner-Jeffreys, David W., Desbois, Andrew P., Feil, Edward J.
Cyhoeddwyd yn Front Microbiol (2020)

Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae

gan Comandatore, Francesco, Sassera, Davide, Bayliss, Sion C, Scaltriti, Erika, Gaiarsa, Stefano, Cao, Xiaoli, Gales, Ana C, Saito, Ryoichi, Pongolini, Stefano, Brisse, Sylvain, Feil, Edward J, Bandi, Claudio
Cyhoeddwyd yn Genome Biol Evol (2019)

Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease

gan Mourkas, Evangelos, Florez‐Cuadrado, Diego, Pascoe, Ben, Calland, Jessica K., Bayliss, Sion C., Mageiros, Leonardos, Méric, Guillaume, Hitchings, Matthew D., Quesada, Alberto, Porrero, Concepción, Ugarte‐Ruiz, María, Gutiérrez‐Fernández, José, Domínguez, Lucas, Sheppard, Samuel K.
Cyhoeddwyd yn Environ Microbiol (2019)

Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon

gan Pascoe, Ben, Schiaffino, Francesca, Murray, Susan, Méric, Guillaume, Bayliss, Sion C., Hitchings, Matthew D., Mourkas, Evangelos, Calland, Jessica K., Burga, Rosa, Yori, Pablo Peñataro, Jolley, Keith A., Cooper, Kerry K., Parker, Craig T., Olortegui, Maribel Paredes, Kosek, Margaret N., Sheppard, Samuel K.
Cyhoeddwyd yn PLoS Negl Trop Dis (2020)

Genome evolution and the emergence of pathogenicity in avian Escherichia coli

gan Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C., Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K., Yahara, Koji, Murray, Susan, Wilkinson, Thomas S., Williams, Lisa K., Hitchings, Matthew D., Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J., Jolley, Keith A., Williams, Nicola J., Corander, Jukka, Sheppard, Samuel K.
Cyhoeddwyd yn Nat Commun (2021)

Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli

gan Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C., Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K., Yahara, Koji, Murray, Susan, Wilkinson, Thomas S., Williams, Lisa K., Hitchings, Matthew D., Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J., Jolley, Keith A., Williams, Nicola J., Corander, Jukka, Sheppard, Samuel K.
Cyhoeddwyd yn Nat Commun (2021)

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing

gan Senghore, Madikay, Bayliss, Sion C., Kwambana-Adams, Brenda A., Foster-Nyarko, Ebenezer, Manneh, Jainaba, Dione, Michel, Badji, Henry, Ebruke, Chinelo, Doughty, Emma L., Thorpe, Harry A., Jasinska, Anna J., Schmitt, Christopher A., Cramer, Jennifer D., Turner, Trudy R., Weinstock, George, Freimer, Nelson B., Pallen, Mark J., Feil, Edward J., Antonio, Martin
Cyhoeddwyd yn Appl Environ Microbiol (2016)

Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni

gan Mourkas, Evangelos, Taylor, Aidan J., Méric, Guillaume, Bayliss, Sion C., Pascoe, Ben, Mageiros, Leonardos, Calland, Jessica K., Hitchings, Matthew D., Ridley, Anne, Vidal, Ana, Forbes, Ken J., Strachan, Norval J. C., Parker, Craig T., Parkhill, Julian, Jolley, Keith A., Cody, Alison J., Maiden, Martin C. J., Kelly, David J., Sheppard, Samuel K.
Cyhoeddwyd yn Proc Natl Acad Sci U S A (2020)