Tbl2KnownGene: A command-line program to convert NCBI.tbl to UCSC knownGene.txt data file

Por Bai, Yongsheng
Publicado em 2014

SNPAAMapperT2K: A genome-wide SNP downstream analysis and annotation pipeline for species annotated with NCBI.tbl data files

Por Bai, Yongsheng
Publicado no Bioinformation (2014)

SNPAAMapper: An efficient genome-wide SNP variant analysis pipeline for next-generation sequencing data

Por Bai, Yongsheng, Cavalcoli, James
Publicado em 2013

Evolutionary origin of regulatory regions of retrogenes in Drosophila

Por Bai, Yongsheng, Casola, Claudio, Betrán, Esther
Publicado em 2008

Quality of regulatory elements in Drosophila retrogenes

Por Bai, Yongsheng, Casola, Claudio, Betrán, Esther
Publicado em 2008

Current status and future perspectives for sequencing livestock genomes

Por Bai, Yongsheng, Sartor, Maureen, Cavalcoli, James
Publicado em 2012

Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

Por Bai, Yongsheng, Casola, Claudio, Feschotte, Cédric, Betrán, Esther
Publicado em 2007

Analyzing the miRNA-Gene Networks to Mine the Important miRNAs under Skin of Human and Mouse

Por Wu, Jianghong, Gong, Husile, Bai, Yongsheng, Zhang, Wenguang
Publicado no Biomed Res Int (2016)

Inhibition of Src phosphorylation reduces damage to the blood-brain barrier following transient focal cerebral ischemia in rats

Por BAI, YONGSHENG, XU, GUANGHUI, XU, MENGXUE, LI, QI, QIN, XINYUE
Publicado em 2014

Correlating Bladder Cancer Risk Genes with Their Targeting MicroRNAs Using MMiRNA-Tar

Por Liu, Yang, Baker, Steve, Jiang, Hui, Stuart, Gary, Bai, Yongsheng
Publicado no Genomics Proteomics Bioinformatics (2015)

Whole blood transcriptional profiling comparison between different milk yield of Chinese Holstein cows using RNA-seq data

Por Bai, Xue, Zheng, Zhuqing, Liu, Bin, Ji, Xiaoyang, Bai, Yongsheng, Zhang, Wenguang
Publicado no BMC Genomics (2016)

Functional Genomics, Genetics, and Bioinformatics 2016

Por Deng, Youping, Wang, Hongwei, Hamamoto, Ryuji, Duan, Shiwei, Pirooznia, Mehdi, Bai, Yongsheng
Publicado no Biomed Res Int (2016)

Evaluation of de novo transcriptome assemblies from RNA-Seq data

Por Li, Bo, Fillmore, Nathanael, Bai, Yongsheng, Collins, Mike, Thomson, James A, Stewart, Ron, Dewey, Colin N
Publicado no Genome Biol (2014)

Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data

Por Bai, Yongsheng, Kinne, Jeff, Donham, Brandon, Jiang, Feng, Ding, Lizhong, Hassler, Justin R., Kaufman, Randal J.
Publicado no BMC Genomics (2016)

Ameloblast transcriptome changes from secretory to maturation stages

Por Simmer, James P., Richardson, Amelia S., Wang, Shih-Kai, Reid, Bryan M., Bai, Yongsheng, Hu, Yuanyuan, Hu, Jan C.-C.
Publicado no Connect Tissue Res (2014)

Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer

Por Bai, Yongsheng, Ding, Lizhong, Baker, Steve, Bai, Jenny M., Rath, Ethan, Jiang, Feng, Wu, Jianghong, Jiang, Hui, Stuart, Gary
Publicado no BMC Bioinformatics (2016)

Nuclear transport of cancer extracellular vesicle-derived biomaterials through nuclear envelope invagination-associated late endosomes

Por Rappa, Germana, Santos, Mark F., Green, Toni M., Karbanová, Jana, Hassler, Justin, Bai, Yongsheng, Barsky, Sanford H., Corbeil, Denis, Lorico, Aurelio
Publicado no Oncotarget (2017)

Novel Bioinformatics Method for Identification of Genome-Wide Non-Canonical Spliced Regions Using RNA-Seq Data

Por Bai, Yongsheng, Hassler, Justin, Ziyar, Ahdad, Li, Philip, Wright, Zachary, Menon, Rajasree, Omenn, Gilbert S., Cavalcoli, James D., Kaufman, Randal J., Sartor, Maureen A.
Publicado em 2014

A Genome-wide Analysis of Human Pluripotent Stem Cell-Derived Endothelial Cells in 2D or 3D Culture

Por Zhang, Jue, Schwartz, Michael P., Hou, Zhonggang, Bai, Yongsheng, Ardalani, Hamisha, Swanson, Scott, Steill, John, Ruotti, Victor, Elwell, Angela, Nguyen, Bao Kim, Bolin, Jennifer, Stewart, Ron, Thomson, James A., Murphy, William L.
Publicado no Stem Cell Reports (2017)

SEC24A deficiency lowers plasma cholesterol through reduced PCSK9 secretion

Por Chen, Xiao-Wei, Wang, He, Bajaj, Kanika, Zhang, Pengcheng, Meng, Zhuo-Xian, Ma, Danjun, Bai, Yongsheng, Liu, Hui-Hui, Adams, Elizabeth, Baines, Andrea, Yu, Genggeng, Sartor, Maureen A, Zhang, Bin, Yi, Zhengping, Lin, Jiandie, Young, Stephen G, Schekman, Randy, Ginsburg, David
Publicado em 2013