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clusterMaker: a multi-algorithm clustering plugin for Cytoscape
The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees

Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories

Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements

BNDB – The Biochemical Network Database
Reflections on the teaching of programming methods and implementations /

Formal foundations of reuse and domain engineering 11th International Conference on Software Reuse, ICSR 2009, Falls Church, VA, USA, September 27-30, 2009 : proceedings /
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