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clusterMaker: a multi-algorithm clustering plugin for Cytoscape
The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements
Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering

BNDB – The Biochemical Network Database
Languages, methodologies and development tools for multi-agent systems First International Workshop, LADS 2007, Durham, UK, September 4-6, 2007 : revised selected papers /

Fifth IFIP International Conference on Theoretical Computer Science - TCS 2008 IFIP 20th World Computer Congress, TC 1, Foundations of Computer Science, September 7-10, 2008, Milano, Italy /
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