NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test

Whole genome sequencing (WGS) enables high resolution typing of bacteria up to the single nucleotide polymorphism (SNP) level. WGS is used in clinical microbiology laboratories for infection control, molecular surveillance and outbreak analyses. Given the large palette of WGS reagents and bioinforma...

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Detalhes bibliográficos
Publicado no:Front Microbiol
Main Authors: Dylus, David, Pillonel, Trestan, Opota, Onya, Wüthrich, Daniel, Seth-Smith, Helena M. B., Egli, Adrian, Leo, Stefano, Lazarevic, Vladimir, Schrenzel, Jacques, Laurent, Sacha, Bertelli, Claire, Blanc, Dominique S., Neuenschwander, Stefan, Ramette, Alban, Falquet, Laurent, Imkamp, Frank, Keller, Peter M., Kahles, Andre, Oberhaensli, Simone, Barbié, Valérie, Dessimoz, Christophe, Greub, Gilbert, Lebrand, Aitana
Formato: Artigo
Idioma:Inglês
Publicado em: Frontiers Media S.A. 2020
Assuntos:
Microbiology
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7793906/
https://ncbi.nlm.nih.gov/pubmed/33424794
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fmicb.2020.591093
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