NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test

Whole genome sequencing (WGS) enables high resolution typing of bacteria up to the single nucleotide polymorphism (SNP) level. WGS is used in clinical microbiology laboratories for infection control, molecular surveillance and outbreak analyses. Given the large palette of WGS reagents and bioinforma...

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Veröffentlicht in:Front Microbiol
Hauptverfasser: Dylus, David, Pillonel, Trestan, Opota, Onya, Wüthrich, Daniel, Seth-Smith, Helena M. B., Egli, Adrian, Leo, Stefano, Lazarevic, Vladimir, Schrenzel, Jacques, Laurent, Sacha, Bertelli, Claire, Blanc, Dominique S., Neuenschwander, Stefan, Ramette, Alban, Falquet, Laurent, Imkamp, Frank, Keller, Peter M., Kahles, Andre, Oberhaensli, Simone, Barbié, Valérie, Dessimoz, Christophe, Greub, Gilbert, Lebrand, Aitana
Format: Artigo
Sprache:Inglês
Veröffentlicht: Frontiers Media S.A. 2020
Schlagworte:
Microbiology
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7793906/
https://ncbi.nlm.nih.gov/pubmed/33424794
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fmicb.2020.591093
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