Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study

BACKGROUND: Nesting is common in LTR retrotransposons, especially in large genomes containing a high number of elements. RESULTS: We analyzed 12 plant genomes and obtained 1491 pairs of nested and original (pre-existing) LTR retrotransposons. We systematically analyzed mutual nesting of individual L...

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Vydáno v:Mob DNA
Hlavní autoři: Jedlicka, Pavel, Lexa, Matej, Vanat, Ivan, Hobza, Roman, Kejnovsky, Eduard
Médium: Artigo
Jazyk:Inglês
Vydáno: BioMed Central 2019
Témata:
Research
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC6911290/
https://ncbi.nlm.nih.gov/pubmed/31871489
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13100-019-0186-z
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