Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

BACKGROUND: Tools for high throughput sequencing and de novo assembly make the analysis of transcriptomes (i.e. the suite of genes expressed in a tissue) feasible for almost any organism. Yet a challenge for biologists is that it can be difficult to assign identities to gene sequences, especially fr...

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Pubblicato in:BMC Bioinformatics
Autori principali: Speiser, Daniel I, Pankey, M Sabrina, Zaharoff, Alexander K, Battelle, Barbara A, Bracken-Grissom, Heather D, Breinholt, Jesse W, Bybee, Seth M, Cronin, Thomas W, Garm, Anders, Lindgren, Annie R, Patel, Nipam H, Porter, Megan L, Protas, Meredith E, Rivera, Ajna S, Serb, Jeanne M, Zigler, Kirk S, Crandall, Keith A, Oakley, Todd H
Natura: Artigo
Lingua:Inglês
Pubblicazione: BioMed Central 2014
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Software
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC4255452/
https://ncbi.nlm.nih.gov/pubmed/25407802
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-014-0350-x
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