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TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

Amplicon sequencing of the hypervariable regions of the small subunit ribosomal RNA gene is a widely accepted method for identifying the members of complex bacterial communities. Several rRNA gene sequence reference databases can be used to assign taxonomic names to the sequencing reads using BLAST,...

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Bibliografiske detaljer
Main Authors: Brandt, Bernd W., Bonder, Marc J., Huse, Susan M., Zaura, Egija
Format: Artigo
Sprog:Inglês
Udgivet: Oxford University Press 2012
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3394339/
https://ncbi.nlm.nih.gov/pubmed/22618877
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gks418
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