Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing

by Feng, Suhua, Zhong, Zhenhui, Wang, Ming, Jacobsen, Steven E.
Published in Epigenetics Chromatin (2020)

Genetic Variation Bias toward Noncoding Regions and Secreted Proteins in the Rice Blast Fungus Magnaporthe oryzae

by Zhong, Zhenhui, Chen, Meilian, Lin, Lianyu, Chen, Ruiqi, Liu, Dan, Norvienyeku, Justice, Zheng, Huakun, Wang, Zonghua
Published in mSystems (2020)

Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection

by Zhong, Zhenhui, Lin, Lianyu, Chen, Meilian, Lin, Lili, Chen, Xiaofeng, Lin, Yahong, Chen, Xi, Wang, Zonghua, Norvienyeku, Justice, Zheng, Huakun
Published in Rice (N Y) (2019)

DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis

by Zhong, Zhenhui, Feng, Suhua, Duttke, Sascha H., Potok, Magdalena E., Zhang, Yiwei, Gallego-Bartolomé, Javier, Liu, Wanlu, Jacobsen, Steven E.
Published in Proc Natl Acad Sci U S A (2021)

Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation

by Li, Xueqin, Harris, C. Jake, Zhong, Zhenhui, Chen, Wei, Liu, Rui, Jia, Bei, Wang, Zonghua, Li, Sisi, Jacobsen, Steven E., Du, Jiamu
Published in Proc Natl Acad Sci U S A (2018)

NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis

by Wang, Yafei, Zhong, Zhenhui, Zhang, Yaxin, Xu, Linhao, Feng, Suhua, Rayatpisheh, Shima, Wohlschlegel, James A., Wang, Zonghua, Jacobsen, Steven E., Ausin, Israel
Published in Nat Commun (2020)

Whole genome and transcriptome analysis reveal adaptive strategies and pathogenesis of Calonectria pseudoreteaudii to Eucalyptus

by Ye, Xiaozhen, Zhong, Zhenhui, Liu, Hongyi, Lin, Lianyu, Guo, Mengmeng, Guo, Wenshuo, Wang, Zonghua, Zhang, Qinghua, Feng, Lizhen, Lu, Guodong, Zhang, Feiping, Chen, Quanzhu
Published in BMC Genomics (2018)

Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase

by Liu, Wanlu, Gallego-Bartolomé, Javier, Zhou, Yuxing, Zhong, Zhenhui, Wang, Ming, Wongpalee, Somsakul Pop, Gardiner, Jason, Feng, Suhua, Kuo, Peggy Hsuanyu, Jacobsen, Steven E.
Published in Nat Commun (2021)

Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition

by Potok, Magdalena E., Wang, Yafei, Xu, Linhao, Zhong, Zhenhui, Liu, Wanlu, Feng, Suhua, Naranbaatar, Bilguudei, Rayatpisheh, Shima, Wang, Zonghua, Wohlschlegel, James A., Ausin, Israel, Jacobsen, Steven E.
Published in Nat Commun (2019)

Bayogenin 3‐O‐cellobioside confers non‐cultivar‐specific defence against the rice blast fungus Pyricularia oryzae

by Norvienyeku, Justice, Lin, Lili, Waheed, Abdul, Chen, Xiaomin, Bao, Jiandong, Aliyu, Sami Rukaiya, Lin, Lianyu, Shabbir, Ammarah, Batool, Wajjiha, Zhong, Zhenhui, Zhou, Jie, Lu, Guodong, Wang, Zonghua
Published in Plant Biotechnol J (2020)

RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis

by Liu, Wanlu, Duttke, Sascha H., Hetzel, Jonathan, Groth, Martin, Feng, Suhua, Gallego-Bartolome, Javier, Zhong, Zhenhui, Kuo, Hsuan Yu, Wang, Zonghua, Zhai, Jixian, Chory, Joanne, Jacobsen, Steven E.
Published in Nat Plants (2018)

Comparative genomic analysis revealed rapid differentiation in the pathogenicity-related gene repertoires between Pyricularia oryzae and Pyricularia penniseti isolated from a Penni...

by Zheng, Huakun, Zhong, Zhenhui, Shi, Mingyue, Zhang, Limei, Lin, Lianyu, Hong, Yonghe, Fang, Tian, Zhu, Yangyan, Guo, Jiayuan, Zhang, Limin, Fang, Jie, Lin, Hui, Norvienyeku, Justice, Chen, Xiaofeng, Lu, Guodong, Hu, Hongli, Wang, Zonghua
Published in BMC Genomics (2018)

Arabidopsis MORC proteins function in the efficient establishment of RNA directed DNA methylation

by Xue, Yan, Zhong, Zhenhui, Harris, C. Jake, Gallego-Bartolomé, Javier, Wang, Ming, Picard, Colette, Cao, Xueshi, Hua, Shan, Kwok, Ivy, Feng, Suhua, Jami-Alahmadi, Yasaman, Sha, Jihui, Gardiner, Jason, Wohlschlegel, James, Jacobsen, Steven E.
Published in Nat Commun (2021)

The characterization of Mediator 12 and 13 as conditional positive gene regulators in Arabidopsis

by Liu, Qikun, Bischof, Sylvain, Harris, C. Jake, Zhong, Zhenhui, Zhan, Lingyu, Nguyen, Calvin, Rashoff, Andrew, Barshop, William D., Sun, Fei, Feng, Suhua, Potok, Magdalena, Gallego-Bartolome, Javier, Zhai, Jixian, Wohlschlegel, James A., Carey, Michael F., Long, Jeffrey A., Jacobsen, Steven E.
Published in Nat Commun (2020)

Population genomic analysis of the rice blast fungus reveals specific events associated with expansion of three main clades

by Zhong, Zhenhui, Chen, Meilian, Lin, Lianyu, Han, Yijuan, Bao, Jiandong, Tang, Wei, Lin, Lili, Lin, Yahong, Somai, Rewish, Lu, Lin, Zhang, Wenjing, Chen, Jian, Hong, Yonghe, Chen, Xiaofeng, Wang, Baohua, Shen, Wei-Chiang, Lu, Guodong, Norvienyeku, Justice, Ebbole, Daniel J., Wang, Zonghua
Published in ISME J (2018)

A DNA methylation reader complex that enhances gene transcription

by Harris, C. Jake, Scheibe, Marion, Wongpalee, Somsakul Pop, Liu, Wanlu, Cornett, Evan M., Vaughan, Robert M., Li, Xueqin, Chen, Wei, Xue, Yan, Zhong, Zhenhui, Yen, Linda, Barshop, William D., Rayatpisheh, Shima, Gallego-Bartolome, Javier, Groth, Martin, Wang, Zonghua, Wohlschlegel, James A., Du, Jiamu, Rothbart, Scott B., Butter, Falk, Jacobsen, Steven E.
Published in Science (2018)

Directional Selection from Host Plants Is a Major Force Driving Host Specificity in Magnaporthe Species

by Zhong, Zhenhui, Norvienyeku, Justice, Chen, Meilian, Bao, Jiandong, Lin, Lianyu, Chen, Liqiong, Lin, Yahong, Wu, Xiaoxian, Cai, Zena, Zhang, Qi, Lin, Xiaoye, Hong, Yonghe, Huang, Jun, Xu, Linghong, Zhang, Honghong, Chen, Long, Tang, Wei, Zheng, Huakun, Chen, Xiaofeng, Wang, Yanli, Lian, Bi, Zhang, Liangsheng, Tang, Haibao, Lu, Guodong, Ebbole, Daniel J., Wang, Baohua, Wang, Zonghua
Published in Sci Rep (2016)