DODO: an efficient orthologous genes assignment tool based on domain architectures. Domain based ortholog detection

by Chen, Ting-wen, Wu, Timothy H, Ng, Wailap V, Lin, Wen-chang
Published 2010

Interrogation of alternative splicing events in duplicated genes during evolution

by Chen, Ting-Wen, Wu, Timothy H, Ng, Wailap V, Lin, Wen-Chang
Published 2011

Modularity of Escherichia coli sRNA regulation revealed by sRNA-target and protein network analysis

by Wu, Timothy H, Chang, Ian Yi-Feng, Chu, Li-chieh Julie, Huang, Hsuan-Cheng, Ng, Wailap Victor
Published 2010

Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates

by Wu, Timothy H, Chu, Lichieh J, Wang, Jian-Chiao, Chen, Ting-Wen, Tien, Yin-Jing, Lin, Wen-Chang, Ng, Wailap V
Published 2012

FastAnnotator- an efficient transcript annotation web tool

by Chen, Ting-Wen, Gan, Ruei-Chi Richie, Wu, Timothy H, Huang, Po-Jung, Lee, Cheng-Yang, Chen, Yi-Ywan M, Chen, Che-Chun, Tang , Petrus
Published 2012

ChIPseek, a web-based analysis tool for ChIP data

by Chen, Ting-Wen, Li, Hsin-Pai, Lee, Chi-Ching, Gan, Ruei-Chi, Huang, Po-Jung, Wu, Timothy H, Lee, Cheng-Yang, Chang, Yi-Feng, Tang, Petrus
Published 2014

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms

by Gan, Ruei-Chi, Chen, Ting-Wen, Wu, Timothy H., Huang, Po-Jung, Lee, Chi-Ching, Yeh, Yuan-Ming, Chiu, Cheng-Hsun, Huang, Hsien-Da, Tang, Petrus
Published in BMC Bioinformatics (2016)

Is the whole greater than the sum of its parts? De novo assembly strategies for bacterial genomes based on paired-end sequencing

by Chen, Ting-Wen, Gan, Ruei-Chi, Chang, Yi-Feng, Liao, Wei-Chao, Wu, Timothy H., Lee, Chi-Ching, Huang, Po-Jung, Lee, Cheng-Yang, Chen, Yi-Ywan M., Chiu, Cheng-Hsun, Tang, Petrus
Published in BMC Genomics (2015)

FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation

by Chen, Ting-Wen, Gan, Ruei-Chi, Fang, Yi-Kai, Chien, Kun-Yi, Liao, Wei-Chao, Chen, Chia-Chun, Wu, Timothy H., Chang, Ian Yi-Feng, Yang, Chi, Huang, Po-Jung, Yeh, Yuan-Ming, Chiu, Cheng-Hsun, Huang, Tzu-Wen, Tang, Petrus
Published in Sci Rep (2017)