Rezultati pretrage - Patrick Munk

MAGICIAN: MAG simulation for investigating criteria for bioinformatic analysis od Kat Steinke, Sünje J. Pamp, Patrick Munk

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Flankophile: a bioinformatic pipeline for prokaryotic genomic synteny analysis od Alix Vincent Thorn, Frank M. Aarestrup, Patrick Munk

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Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome od Line Jensen Ostenfeld, Patrick Munk, Frank M. Aarestrup, Saria Otani

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Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome. od Line Jensen Ostenfeld, Patrick Munk, Frank M Aarestrup, Saria Otani

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Urban sewage resistomes partially reflect clinical resistomes od Alix Vincent Thorn, Christian Brinch, Frank M. Aarestrup, Patrick Munk

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A curated data resource of 214K metagenomes for characterization of the global antimicrobial resistome. od Hannah-Marie Martiny, Patrick Munk, Christian Brinch, Frank M Aarestrup, Thomas N Petersen

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A case study using sewage metagenomic data for assessment of text-to-SQL capabilities in large language models od Ágnes Becsei, József Stéger, Dávid Visontai, Patrick Munk, Frank M. Aarestrup, István Csabai, Krisztián Papp

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Utilizing co-abundances of antimicrobial resistance genes to identify potential co-selection in the resistome od Hannah-Marie Martiny, Patrick Munk, Christian Brinch, Frank M. Aarestrup, M. Luz Calle, Thomas N. Petersen

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High throughput single cell metagenomic sequencing with semi-permeable capsules: unraveling microbial diversity at the single-cell level in sewage and fecal microbiomes od Meilee Ling, Judit Szarvas, Vaida Kurmauskaitė, Vaidotas Kiseliovas, Rapolas Žilionis, Rapolas Žilionis, Baptiste Avot, Baptiste Avot, Patrick Munk, Frank M. Aarestrup

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Metagenomics analysis of sewage for surveillance of antimicrobial resistance in South Africa od Anthony M. Smith, Masindi Ramudzulu, Patrick Munk, Baptiste J. P. Avot, Kerneels C. M. Esterhuyse, Nico van Blerk, Stanford Kwenda, Phuti Sekwadi

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SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies od Derya Aytan-Aktug, Vladislav Grigorjev, Judit Szarvas, Philip T. L. C. Clausen, Patrick Munk, Marcus Nguyen, James J. Davis, Frank M. Aarestrup, Ole Lund

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PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest od Derya Aytan-Aktug, Philip T. L. C. Clausen, Judit Szarvas, Patrick Munk, Saria Otani, Marcus Nguyen, James J. Davis, Ole Lund, Frank M. Aarestrup

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Association of health, nutrition, and socioeconomic variables with global antimicrobial resistance: a modelling study od Patrick Murigu Kamau Njage, PhD, Bram van Bunnik, PhD, Patrick Munk, PhD, Ana Rita Pinheiro Marques, PhD, Frank M Aarestrup, ProfPhD

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Author Correction: Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes od Hannah-Marie Martiny, Patrick Munk, Alessandro Fuschi, Ágnes Becsei, Nikiforos Pyrounakis, Christian Brinch, Global Sewage Consortium, D. G. Joakim Larsson, Marion Koopmans, Daniel Remondini, István Csabai, Frank M. Aarestrup

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Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes od Hannah-Marie Martiny, Patrick Munk, Alessandro Fuschi, Ágnes Becsei, Nikiforos Pyrounakis, Christian Brinch, Global Sewage Consortium, D. G. Joakim Larsson, Marion Koopmans, Daniel Remondini, István Csabai, Frank M. Aarestrup

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Unveiling the global urban virome through wastewater metagenomics od Nathalie Worp, David F. Nieuwenhuijse, Ray W. Izquierdo-Lara, Claudia M. E. Schapendonk, Christian Brinch, Emilie Egholm Bruun Jensen, Patrick Munk, Rene S. Hendriksen, Global Sewage Surveillance Consortium, Frank Aarestrup, Bas B. Oude Munnink, Marion P. G. Koopmans, Miranda de Graaf

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The European livestock resistome od Patrick Munk, Dongsheng Yang, Timo Röder, Leonie Maier, Thomas Nordahl Petersen, Ana Sofia Ribeiro Duarte, Philip T. L. C. Clausen, Christian Brinch, Liese Van Gompel, Roosmarijn Luiken, Jaap A. Wagenaar, Heike Schmitt, Dick J. J. Heederik, Dik J. Mevius, Lidwien A. M. Smit, Alex Bossers, Frank M. Aarestrup

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Risk Factors for Antimicrobial Resistance in Turkey Farms: A Cross-Sectional Study in Three European Countries od Mayu Horie, Dongsheng Yang, Philip Joosten, Patrick Munk, Katharina Wadepohl, Claire Chauvin, Gabriel Moyano, Magdalena Skarżyńska, Jeroen Dewulf, Frank M. Aarestrup, Thomas Blaha, Pascal Sanders, Bruno Gonzalez-Zorn, Dariusz Wasyl, Jaap A. Wagenaar, Dick Heederik, Dik Mevius, Heike Schmitt, Lidwien A. M. Smit, Liese Van Gompel

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Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance od Ágnes Becsei, Alessandro Fuschi, Saria Otani, Ravi Kant, Ilja Weinstein, Patricia Alba, József Stéger, Dávid Visontai, Christian Brinch, Miranda de Graaf, Claudia M. E. Schapendonk, Antonio Battisti, Alessandra De Cesare, Chiara Oliveri, Fulvia Troja, Tarja Sironen, Olli Vapalahti, Frédérique Pasquali, Krisztián Bányai, Magdolna Makó, Péter Pollner, Alessandra Merlotti, Marion Koopmans, Istvan Csabai, Daniel Remondini, Frank M. Aarestrup, Patrick Munk

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Author Correction: Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance od Ágnes Becsei, Alessandro Fuschi, Saria Otani, Ravi Kant, Ilja Weinstein, Patricia Alba, József Stéger, Dávid Visontai, Christian Brinch, Miranda de Graaf, Claudia M. E. Schapendonk, Antonio Battisti, Alessandra De Cesare, Chiara Oliveri, Fulvia Troja, Tarja Sironen, Olli Vapalahti, Frédérique Pasquali, Krisztián Bányai, Magdolna Makó, Péter Pollner, Alessandra Merlotti, Marion Koopmans, Istvan Csabai, Daniel Remondini, Frank M. Aarestrup, Patrick Munk

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