Hakutulokset - Luis M Rodriguez-R

Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics. Tekijä Rachel Poretsky, Luis M Rodriguez-R, Chengwei Luo, Despina Tsementzi, Konstantinos T Konstantinidis

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High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries Tekijä Chirag Jain, Luis M. Rodriguez-R, Adam M. Phillippy, Konstantinos T. Konstantinidis, Srinivas Aluru

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Reply to: “Re-evaluating the evidence for a universal genetic boundary among microbial species” Tekijä Luis M. Rodriguez-R, Chirag Jain, Roth E. Conrad, Srinivas Aluru, Konstantinos T. Konstantinidis

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Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity Tekijä Luis M. Rodriguez-R, Santosh Gunturu, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis

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An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains. Tekijä Alvaro L Pérez-Quintero, Luis M Rodriguez-R, Alexis Dereeper, Camilo López, Ralf Koebnik, Boris Szurek, Sebastien Cunnac

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Why and how to use the SeqCode Tekijä William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Konstantinos T. Konstantinidis, Marike Palmer, Luis M. Rodriguez‐R, Iain Sutcliffe, Fengping Wang

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imGLAD: accurate detection and quantification of target organisms in metagenomes Tekijä Juan C. Castro, Luis M. Rodriguez-R, William T. Harvey, Michael R. Weigand, Janet K. Hatt, Michelle Q. Carter, Konstantinos T. Konstantinidis

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Determinism and stochasticity drive microbial community assembly and microbial interactions in calcareous glacier forefields Tekijä Edoardo Mandolini, Maraike Probst, Anusha Telagathoti, Beat Frey, Luis M. Rodriguez-R., Flavio Fornasier, Nadine Praeg, Paul Illmer, Ursula Peintner

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Novel bacterial taxa in a minimal lignocellulolytic consortium and their potential for lignin and plastics transformation Tekijä Carlos Andrés Díaz Rodríguez, Laura Díaz-García, Boyke Bunk, Cathrin Spröer, Katherine Herrera, Natalia A. Tarazona, Luis M. Rodriguez-R, Jörg Overmann, Diego Javier Jiménez

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Discovery of Phytophthora infestans genes expressed in planta through mining of cDNA libraries. Tekijä Roberto Sierra, Luis M Rodríguez-R, Diego Chaves, Andrés Pinzón, Alejandro Grajales, Alejandro Rojas, Gabriel Mutis, Martha Cárdenas, Daniel Burbano, Pedro Jiménez, Adriana Bernal, Silvia Restrepo

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Towards estimating the number of strains that make up a natural bacterial population Tekijä Tomeu Viver, Roth E. Conrad, Luis M. Rodriguez-R, Ana S. Ramírez, Stephanus N. Venter, Jairo Rocha-Cárdenas, Mercè Llabrés, Rudolf Amann, Konstantinos T. Konstantinidis, Ramon Rossello-Mora

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RecruitPlotEasy: An Advanced Read Recruitment Plot Tool for Assessing Metagenomic Population Abundance and Genetic Diversity Tekijä Kenji Gerhardt, Kenji Gerhardt, Carlos A. Ruiz-Perez, Carlos A. Ruiz-Perez, Luis M. Rodriguez-R, Roth E. Conrad, Konstantinos T. Konstantinidis, Konstantinos T. Konstantinidis, Konstantinos T. Konstantinidis, Konstantinos T. Konstantinidis

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Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination Tekijä Roth E. Conrad, Catherine E. Brink, Tomeu Viver, Luis M. Rodriguez-R, Borja Aldeguer-Riquelme, Janet K. Hatt, Stephanus N. Venter, Ramon Rossello-Mora, Rudolf Amann, Konstantinos T. Konstantinidis

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Higher pathogen load in children from Mozambique vs. USA revealed by comparative fecal microbiome profiling Tekijä Minjae Kim, Luis M. Rodriguez-R, Janet K. Hatt, Osman Kayali, Rassul Nalá, Anne L. Dunlop, Patricia A. Brennan, Elizabeth Corwin, Alicia K. Smith, Joe Brown, Konstantinos T. Konstantinidis

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Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains Tekijä Angela Pena-Gonzalez, Luis M. Rodriguez-R, Chung K. Marston, Jay E. Gee, Christopher A. Gulvik, Cari B. Kolton, Elke Saile, Michael Frace, Alex R. Hoffmaster, Konstantinos T. Konstantinidis

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An ANI gap within bacterial species that advances the definitions of intra-species units Tekijä Luis M. Rodriguez-R, Roth E. Conrad, Tomeu Viver, Dorian J. Feistel, Blake G. Lindner, Stephanus N. Venter, Luis H. Orellana, Rudolf Amann, Ramon Rossello-Mora, Konstantinos T. Konstantinidis

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Genomic Characterization and Copy Number Variation of <italic toggle="yes">Bacillus anthracis</italic> Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains Tekijä Angela Pena-Gonzalez, Luis M. Rodriguez-R, Chung K. Marston, Jay E. Gee, Christopher A. Gulvik, Cari B. Kolton, Elke Saile, Michael Frace, Alex R. Hoffmaster, Konstantinos T. Konstantinidis

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Transcriptomic and rRNA:rDNA Signatures of Environmental versus Enteric Enterococcus faecalis Isolates under Oligotrophic Freshwater Conditions Tekijä Brittany Suttner, Minjae Kim, Eric R. Johnston, Luis H. Orellana, Carlos A. Ruiz-Perez, Luis M. Rodriguez-R, Janet K. Hatt, Joe Brown, Jorge W. Santo Domingo, Konstantinos T. Konstantinidis

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New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters Tekijä Stefano Campanaro, Laura Treu, Luis M. Rodriguez-R, Adam Kovalovszki, Ryan M. Ziels, Irena Maus, Xinyu Zhu, Panagiotis G. Kougias, Arianna Basile, Gang Luo, Andreas Schlüter, Konstantinos T. Konstantinidis, Irini Angelidaki

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ROCker Models for Reliable Detection and Typing of Short-Read Sequences Carrying β-Lactamase Genes Tekijä Si-Yu Zhang, Brittany Suttner, Luis M. Rodriguez-R, Luis H. Orellana, Roth E. Conrad, Fang Liu, Jessica L. Rowell, Hattie E. Webb, Amanda J. Williams-Newkirk, Andrew Huang, Konstantinos T. Konstantinidis

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