Søgeresultater - Justin P. Shaffer

Transcriptional Profiles of a Foliar Fungal Endophyte (Pestalotiopsis, Ascomycota) and Its Bacterial Symbiont (Luteibacter, Gammaproteobacteria) Reveal Sulfur Exchange and Growth R... af Justin P. Shaffer, Morgan E. Carter, Joseph E. Spraker, Meara Clark, Brian A. Smith, Kevin L. Hockett, David A. Baltrus, A. Elizabeth Arnold

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A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities af Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight

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Community assembly modeling of the microbiome within Barrett’s esophagus and esophageal adenocarcinoma af Caitlin Guccione, Igor Sfiligoi, Antonio Gonzalez, Justin P. Shaffer, Mariya Kazachkova, Yuhan Weng, Daniel McDonald, Shailja C. Shah, Samuel S. Minot, Thomas G. Paulson, William M. Grady, Ludmil B. Alexandrov, Rob Knight, Kit Curtius

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Postnatal exposure to ambient air pollutants is associated with the composition of the infant gut microbiota at 6-months of age af Maximilian J. Bailey, Elizabeth A. Holzhausen, Zachariah E. M. Morgan, Noopur Naik, Justin P. Shaffer, Donghai Liang, Howard H. Chang, Jeremy Sarnat, Shan Sun, Paige K. Berger, Kelsey A. Schmidt, Frederick Lurmann, Michael I. Goran, Tanya L. Alderete

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A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities af Justin P Shaffer, Clarisse Marotz, Pedro Belda-Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki, Rodolfo A Salido, Carolina S Carpenter, Livia S Zaramela, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Serena Fraraccio, Gail Ackermann, Gregory Humphrey, Austin D Swafford, Sandrine Miller-Montgomery, Rob Knight

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Peripheral neuronal activation shapes the microbiome and alters gut physiology af Jessica A. Griffiths, Bryan B. Yoo, Peter Thuy-Boun, Victor J. Cantu, Kelly C. Weldon, Collin Challis, Michael J. Sweredoski, Ken Y. Chan, Taren M. Thron, Gil Sharon, Annie Moradian, Gregory Humphrey, Qiyun Zhu, Justin P. Shaffer, Dennis W. Wolan, Pieter C. Dorrestein, Rob Knight, Viviana Gradinaru, Sarkis K. Mazmanian

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Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes af Caitriona Brennan, Justin P. Shaffer, Pedro Belda-Ferre, Ipsita Mohanty, Yuhan Weng, Kalen Cantrell, Gail Ackermann, Celeste Allaband, MacKenzie Bryant, Sawyer Farmer, Antonio González, Daniel McDonald, Cameron Martino, Michael J. Meehan, Gibraan Rahman, Rodolfo A. Salido, Tara Schwartz, Se Jin Song, Caitlin Tribelhorn, Helena M. Tubb, Pieter C. Dorrestein, Rob Knight

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Correction for Zhu et al., “Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy” af Qiyun Zhu, Shi Huang, Antonio Gonzalez, Imran McGrath, Daniel McDonald, Niina Haiminen, George Armstrong, Yoshiki Vázquez-Baeza, Julian Yu, Justin Kuczynski, Gregory D. Sepich-Poore, Austin D. Swafford, Promi Das, Justin P. Shaffer, Franck Lejzerowicz, Pedro Belda-Ferre, Aki S. Havulinna, Guillaume Méric, Teemu Niiranen, Leo Lahti, Veikko Salomaa, Ho-Cheol Kim, Mohit Jain, Michael Inouye, Jack A. Gilbert, Rob Knight

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