Bilaketaren emaitzak - Inanc Birol

HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort nork René L. Warren, Inanc Birol

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Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction nork Chenkai Li, René L. Warren, Inanc Birol

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GoldPolish-target: targeted long-read genome assembly polishing nork Emily Zhang, Lauren Coombe, Johnathan Wong, René L. Warren, Inanç Birol

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ntSynt: multi-genome synteny detection using minimizer graph mappings nork Lauren Coombe, Parham Kazemi, Johnathan Wong, Inanc Birol, René L. Warren

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A comprehensive tandem repeat catalog of the human genome nork Readman Chiu, Indhu-Shree Rajan-Babu, Jan M. Friedman, Inanc Birol

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Leaf pigmentation in Cannabis sativa: Characterization of anthocyanin biosynthesis in colorful Cannabis varieties nork Kristina K. Gagalova, Yifan Yan, Shumin Wang, Till Matzat, Simone D. Castellarin, Inanc Birol, David Edwards, Mathias Schuetz

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Spaced Seed Data Structures for De Novo Assembly nork Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D. Jackman, Karthika Raghavan, Benjamin P. Vandervalk, Anthony Raymond, René L. Warren

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mtGrasp: Streamlined reference‐grade mitochondrial genome assembly and standardization to enhance metazoan mitogenome resources nork Mark Louie D. Lopez, Cecilia L. Yang, Lauren Coombe, René L. Warren, Michael J. Allison, Jacob J. Imbery, Inanc Birol, Caren C. Helbing

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Enabling robust environmental DNA assay design with “unikseq” for the identification of taxon‐specific regions within whole mitochondrial genomes nork Michael J. Allison, René L. Warren, M. Louie Lopez, Neha Acharya‐Patel, Jacob J. Imbery, Lauren Coombe, Cecilia L. Yang, Inanc Birol, Caren C. Helbing

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Long-insert sequence capture detects high copy numbers in a defence-related beta-glucosidase gene βglu-1 with large variations in white spruce but not Norway spruce nork Tin Hang Hung, Ernest T. Y. Wu, Pauls Zeltiņš, Āris Jansons, Aziz Ullah, Nadir Erbilgin, Joerg Bohlmann, Jean Bousquet, Inanc Birol, Sonya M. Clegg, John J. MacKay

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Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage nork Diana Lin, Darcy Sutherland, Sambina Islam Aninta, Nathan Louie, Ka Ming Nip, Chenkai Li, Anat Yanai, Lauren Coombe, René L. Warren, Caren C. Helbing, Linda M. N. Hoang, Inanc Birol

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AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens nork Chenkai Li, Darcy Sutherland, S. Austin Hammond, Chen Yang, Figali Taho, Lauren Bergman, Simon Houston, René L. Warren, Titus Wong, Linda M. N. Hoang, Caroline E. Cameron, Caren C. Helbing, Inanc Birol

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Comparison of environmental DNA and SCUBA diving methods to survey keystone rockfish species on the Central Coast of British Columbia, Canada nork Neha Acharya-Patel, Emma Groenwold, Matthew A. Lemay, Rute Clemente-Carvalho, Evan Morien, Sarah Dudas, Emily Rubidge, Cecilia Lingyu Yang, Lauren Coombe, René L. Warren, Alejandro Frid, Inanc Birol, Caren C. Helbing

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Associating Biological Activity and Predicted Structure of Antimicrobial Peptides from Amphibians and Insects nork Amelia Richter, Darcy Sutherland, Hossein Ebrahimikondori, Alana Babcock, Nathan Louie, Chenkai Li, Lauren Coombe, Diana Lin, René L. Warren, Anat Yanai, Monica Kotkoff, Caren C. Helbing, Fraser Hof, Linda M. N. Hoang, Inanc Birol

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Genome-Enhanced Detection and Identification (GEDI) of plant pathogens nork Nicolas Feau, Stéphanie Beauseigle, Marie-Josée Bergeron, Guillaume J. Bilodeau, Inanc Birol, Sandra Cervantes-Arango, Braham Dhillon, Angela L. Dale, Padmini Herath, Steven J.M. Jones, Josyanne Lamarche, Dario I. Ojeda, Monique L. Sakalidis, Greg Taylor, Clement K.M. Tsui, Adnan Uzunovic, Hesther Yueh, Philippe Tanguay, Richard C. Hamelin

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Environmental DNA (eDNA) Quantitative Polymerase Chain Reaction‐Based Assays for Surveying 125 Taxa of Importance to North America nork Valerie S. Langlois, Mark Louie D. Lopez, Michael J. Allison, Jacob J. Imbery, Julie Couillard, Neha Acharya‐Patel, Lauren C. Bergman, Matthew T. Bonderud, Marie‐Pier Brochu, Marie‐Lee Castonguay, Lauren Coombe, Anna H. Dema, Emma T. Groenwold, Hajeong Lee, Isabel G. Ma, Yilin Ren, Graeme K. Knowles, Fidji Sandré, Tuan Anh To, René L. Warren, Cecilia L. Yang, Inanc Birol, Caren C. Helbing

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Efficacy and safety evaluation of artificial intelligence-identified antimicrobial peptides targeting avian pathogenic Escherichia coli in broiler chickens nork Emre Demirsoy, Teagan I. Parkin, Shaeleen E. Mihalynuk, Anna H. Dema, Lorissa Corrie, Marika E. Heilker, Haley N. Kuecks-Winger, Anat Yanai, Uluc B. Birol, Michael McIlwee, Kay de Wet, Mathijs Knipscheer, Victoria Bowes, Vanessa Tuytel, Liam Ritchie, Wolfgang Köster, Emil Berberov, William R. Cox, Monica Kotkoff, Vanessa C. Thompson, René L. Warren, Erin Fraser, Linda M. N. Hoang, Fraser Hof, Fatih Birol, Caren C. Helbing, Inanc Birol

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