Informatics of Protein and Posttranslational Modification Detection via Shotgun Proteomics

le Holman, Jerry D., Dasari, Surendra, Tabb, David L.
Foilsithe 2013

Employing ProteoWizard to Convert Raw Mass Spectrometry Data

le Holman, Jerry D., Tabb, David L., Mallick, Parag
Foilsithe 2014

Identifying proteomic LC-MS/MS data sets with Bumbershoot and IDPicker

le Holman, Jerry D., Ma, Ze-Qiang, Tabb, David L.
Foilsithe in Curr Protoc Bioinformatics (2012)

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates

le Wang, Dong, Dasari, Surendra, Chambers, Matthew C., Holman, Jerry D., Chen, Kan, Liebler, Daniel C., Orton, Daniel J., Purvine, Samuel O., Monroe, Matthew E., Chung, Chang Y., Rose, Kristie L., Tabb, David L.
Foilsithe 2013

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

le Tabb, David L., Wang, Xia, Carr, Steven A., Clauser, Karl R., Mertins, Philipp, Chambers, Matthew C., Holman, Jerry D., Wang, Jing, Zhang, Bing, Zimmerman, Lisa J., Chen, Xian, Gunawardena, Harsha P., Davies, Sherri R., Ellis, Matthew J. C., Li, Shunqiang, Townsend, R. Reid, Boja, Emily S., Ketchum, Karen A., Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Liu, Tao, Kim, Sangtae, McDermott, Jason E., Payne, Samuel H., Petyuk, Vladislav A., Rodland, Karin D., Smith, Richard D., Yang, Feng, Chan, Daniel W., Zhang, Bai, Zhang, Hui, Zhang, Zhen, Zhou, Jian-Ying, Liebler, Daniel C.
Foilsithe in J Proteome Res (2015)