Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data

od Cunningham Pádraig, Bryan Kenneth
Izdano 2008-09-01

Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data

od Bryan, Kenneth, Cunningham, Pádraig
Izdano 2008

MetaFIND: A feature analysis tool for metabolomics data

od Bryan, Kenneth, Brennan, Lorraine, Cunningham, Pádraig
Izdano 2008

Using biological networks to integrate, visualize and analyze genomics data

od Charitou, Theodosia, Bryan, Kenneth, Lynn, David J.
izdano v Genet Sel Evol (2016)

DyNet: visualization and analysis of dynamic molecular interaction networks

od Goenawan, Ivan H., Bryan, Kenneth, Lynn, David J.
izdano v Bioinformatics (2016)

Interactome analysis of transforming growth factor-β-activated kinase 1 in Helicobacter pylori-infected cells revealed novel regulators tripartite motif 28 and CDC37

od Sokolova, Olga, Kähne, Thilo, Bryan, Kenneth, Naumann, Michael
izdano v Oncotarget (2018)

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization

od Frias, Silvia, Bryan, Kenneth, Brinkman, Fiona S. L., Lynn, David J.
izdano v Database (Oxford) (2015)

A comparative analysis of the transcriptome profiles of liver and muscle tissue in pigs divergent for feed efficiency

od Vigors, Stafford, O’Doherty, John V., Bryan, Kenneth, Sweeney, Torres
izdano v BMC Genomics (2019)

Expressional alterations in functional ultra-conserved non-coding rnas in response to all-trans retinoic acid - induced differentiation in neuroblastoma cells

od Watters, Karen M, Bryan, Kenneth, Foley, Niamh H, Meehan, Maria, Stallings, Raymond L
Izdano 2013

miRNA Expression Profiling of the Murine TH-MYCN Neuroblastoma Model Reveals Similarities with Human Tumors and Identifies Novel Candidate MiRNAs

od Terrile, Marta, Bryan, Kenneth, Vaughan, Lynsey, Hallsworth, Albert, Webber, Hannah, Chesler, Louis, Stallings, Raymond L.
Izdano 2011

Co-Localization of the Oncogenic Transcription Factor MYCN and the DNA Methyl Binding Protein MeCP2 at Genomic Sites in Neuroblastoma

od Murphy, Derek M., Buckley, Patrick G., Das, Sudipto, Watters, Karen M., Bryan, Kenneth, Stallings, Raymond L.
Izdano 2011

Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks

od Muetze, Tanja, Goenawan, Ivan H., Wiencko, Heather L., Bernal-Llinares, Manuel, Bryan, Kenneth, Lynn, David J.
izdano v F1000Res (2016)

MiRNA-335 suppresses neuroblastoma cell invasiveness by direct targeting of multiple genes from the non-canonical TGF-β signalling pathway

od Lynch, Jennifer, Fay, Joanna, Meehan, Maria, Bryan, Kenneth, Watters, Karen M., Murphy, Derek M., Stallings, Raymond L.
Izdano 2012

MicroRNA Mediates DNA De-methylation Events Triggered By Retinoic Acid During Neuroblastoma Cell Differentiation

od Das, Sudipto, Foley, Niamh, Bryan, Kenneth, Watters, Karen M, Bray, Isabella, Murphy, Derek M, Buckley, Patrick G, Stallings, Raymond L
Izdano 2010

MicroRNA-542-5p as a Novel Tumor Suppressor in Neuroblastoma

od Bray, Isabella, Tivnan, Amanda, Bryan, Kenneth, Foley, Niamh H, Watters, Karen M, Tracey, Lorraine, Davidoff, Andrew M, Stallings, Raymond L
Izdano 2011

Discovery and visualization of miRNA–mRNA functional modules within integrated data using bicluster analysis

od Bryan, Kenneth, Terrile, Marta, Bray, Isabella M., Domingo-Fernandéz, Raquel, Watters, Karen M., Koster, Jan, Versteeg, Rogier, Stallings, Raymond L.
Izdano 2014

miRNA Profiles as a Predictor of Chemoresponsiveness in Wilms’ Tumor Blastema

od Watson, Jenny A., Bryan, Kenneth, Williams, Richard, Popov, Sergey, Vujanic, Gordan, Coulomb, Aurore, Boccon-Gibod, Liliane, Graf, Norbert, Pritchard-Jones, Kathy, O’Sullivan, Maureen
Izdano 2013

Differential DNA Methylation Patterns Define Status Epilepticus and Epileptic Tolerance

od Miller-Delaney, Suzanne F. C., Das, Sudipto, Sano, Takanori, Jimenez-Mateos, Eva M., Bryan, Kenneth, Buckley, Patrick G., Stallings, Raymond L., Henshall, David C.
izdano v J Neurosci (2012)

MicroRNA Regulation of Bovine Monocyte Inflammatory and Metabolic Networks in an In Vivo Infection Model

od Lawless, Nathan, Reinhardt, Timothy A., Bryan, Kenneth, Baker, Mike, Pesch, Bruce, Zimmerman, Duane, Zuelke, Kurt, Sonstegard, Tad, O’Farrelly, Cliona, Lippolis, John D., Lynn, David J.
Izdano 2014

Global MYCN Transcription Factor Binding Analysis in Neuroblastoma Reveals Association with Distinct E-Box Motifs and Regions of DNA Hypermethylation

od Murphy, Derek M., Buckley, Patrick G., Bryan, Kenneth, Das, Sudipto, Alcock, Leah, Foley, Niamh H., Prenter, Suzanne, Bray, Isabella, Watters, Karen M., Higgins, Desmond, Stallings, Raymond L.
Izdano 2009