Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data

Por Cunningham Pádraig, Bryan Kenneth
Publicado em 2008-09-01

Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data

Por Bryan, Kenneth, Cunningham, Pádraig
Publicado em 2008

MetaFIND: A feature analysis tool for metabolomics data

Por Bryan, Kenneth, Brennan, Lorraine, Cunningham, Pádraig
Publicado em 2008

Using biological networks to integrate, visualize and analyze genomics data

Por Charitou, Theodosia, Bryan, Kenneth, Lynn, David J.
Publicado no Genet Sel Evol (2016)

DyNet: visualization and analysis of dynamic molecular interaction networks

Por Goenawan, Ivan H., Bryan, Kenneth, Lynn, David J.
Publicado no Bioinformatics (2016)

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization

Por Frias, Silvia, Bryan, Kenneth, Brinkman, Fiona S. L., Lynn, David J.
Publicado no Database (Oxford) (2015)

Expressional alterations in functional ultra-conserved non-coding rnas in response to all-trans retinoic acid - induced differentiation in neuroblastoma cells

Por Watters, Karen M, Bryan, Kenneth, Foley, Niamh H, Meehan, Maria, Stallings, Raymond L
Publicado em 2013

miRNA Expression Profiling of the Murine TH-MYCN Neuroblastoma Model Reveals Similarities with Human Tumors and Identifies Novel Candidate MiRNAs

Por Terrile, Marta, Bryan, Kenneth, Vaughan, Lynsey, Hallsworth, Albert, Webber, Hannah, Chesler, Louis, Stallings, Raymond L.
Publicado em 2011

Co-Localization of the Oncogenic Transcription Factor MYCN and the DNA Methyl Binding Protein MeCP2 at Genomic Sites in Neuroblastoma

Por Murphy, Derek M., Buckley, Patrick G., Das, Sudipto, Watters, Karen M., Bryan, Kenneth, Stallings, Raymond L.
Publicado em 2011

Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks

Por Muetze, Tanja, Goenawan, Ivan H., Wiencko, Heather L., Bernal-Llinares, Manuel, Bryan, Kenneth, Lynn, David J.
Publicado no F1000Res (2016)

MiRNA-335 suppresses neuroblastoma cell invasiveness by direct targeting of multiple genes from the non-canonical TGF-β signalling pathway

Por Lynch, Jennifer, Fay, Joanna, Meehan, Maria, Bryan, Kenneth, Watters, Karen M., Murphy, Derek M., Stallings, Raymond L.
Publicado em 2012

MicroRNA Mediates DNA De-methylation Events Triggered By Retinoic Acid During Neuroblastoma Cell Differentiation

Por Das, Sudipto, Foley, Niamh, Bryan, Kenneth, Watters, Karen M, Bray, Isabella, Murphy, Derek M, Buckley, Patrick G, Stallings, Raymond L
Publicado em 2010

MicroRNA-542-5p as a Novel Tumor Suppressor in Neuroblastoma

Por Bray, Isabella, Tivnan, Amanda, Bryan, Kenneth, Foley, Niamh H, Watters, Karen M, Tracey, Lorraine, Davidoff, Andrew M, Stallings, Raymond L
Publicado em 2011

Discovery and visualization of miRNA–mRNA functional modules within integrated data using bicluster analysis

Por Bryan, Kenneth, Terrile, Marta, Bray, Isabella M., Domingo-Fernandéz, Raquel, Watters, Karen M., Koster, Jan, Versteeg, Rogier, Stallings, Raymond L.
Publicado em 2014

miRNA Profiles as a Predictor of Chemoresponsiveness in Wilms’ Tumor Blastema

Por Watson, Jenny A., Bryan, Kenneth, Williams, Richard, Popov, Sergey, Vujanic, Gordan, Coulomb, Aurore, Boccon-Gibod, Liliane, Graf, Norbert, Pritchard-Jones, Kathy, O’Sullivan, Maureen
Publicado em 2013

MicroRNA Regulation of Bovine Monocyte Inflammatory and Metabolic Networks in an In Vivo Infection Model

Por Lawless, Nathan, Reinhardt, Timothy A., Bryan, Kenneth, Baker, Mike, Pesch, Bruce, Zimmerman, Duane, Zuelke, Kurt, Sonstegard, Tad, O’Farrelly, Cliona, Lippolis, John D., Lynn, David J.
Publicado em 2014

Global MYCN Transcription Factor Binding Analysis in Neuroblastoma Reveals Association with Distinct E-Box Motifs and Regions of DNA Hypermethylation

Por Murphy, Derek M., Buckley, Patrick G., Bryan, Kenneth, Das, Sudipto, Alcock, Leah, Foley, Niamh H., Prenter, Suzanne, Bray, Isabella, Watters, Karen M., Higgins, Desmond, Stallings, Raymond L.
Publicado em 2009

MicroRNA-184 inhibits neuroblastoma cell survival through targeting the serine/threonine kinase AKT2

Por Foley, Niamh H, Bray, Isabella M, Tivnan, Amanda, Bryan, Kenneth, Murphy, Derek M, Buckley, Patrick G, Ryan, Jacqueline, O'Meara, Anne, O'Sullivan, Maureen, Stallings, Raymond L
Publicado em 2010

Differential DNA methylation profiles of coding and non-coding genes define hippocampal sclerosis in human temporal lobe epilepsy

Por Miller-Delaney, Suzanne F.C., Bryan, Kenneth, Das, Sudipto, McKiernan, Ross C., Bray, Isabella M., Reynolds, James P., Gwinn, Ryder, Stallings, Raymond L., Henshall, David C.
Publicado no Brain (2015)

Chromosomal and miRNA Expression Patterns Reveal Biologically Distinct Subgroups of 11q− Neuroblastoma

Por Buckley, Patrick G, Alcock, Leah, Bryan, Kenneth, Bray, Isabella, Schulte, Johannes H, Schramm, Alexander, Eggert, Angelika, Mestdagh, Pieter, De Preter, Katleen, Vandesompele, Jo, Speleman, Frank, Stallings, Raymond L
Publicado em 2010