Inference of the Properties of the Recombination Process from Whole Bacterial Genomes

by Ansari, M. Azim, Didelot, Xavier
Published 2014

Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree

by Ansari, M. Azim, Didelot, Xavier
Published in Genetics (2016)

Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of...

by Simmonds, Peter, Ansari, M. Azim
Published in PLoS Pathog (2021)

Testing for dependence on tree structures

by Behr, Merle, Ansari, M. Azim, Munk, Axel, Holmes, Chris
Published in Proc Natl Acad Sci U S A (2020)

Efficient Inference of Recombination Hot Regions in Bacterial Genomes

by Yahara, Koji, Didelot, Xavier, Ansari, M. Azim, Sheppard, Samuel K., Falush, Daniel
Published 2014

Interferon lambda 4 variant rs12979860 is not associated with RAV NS5A Y93H in hepatitis C virus genotype 3a

by Pedergnana, Vincent, Smith, David, Klenerman, Paul, Barnes, Eleanor, Spencer, Chris C. A., Ansari, M. Azim
Published in Hepatology (2016)

Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences

by McNaughton, Anna L., Revill, Peter A., Littlejohn, Margaret, Matthews, Philippa C., Ansari, M. Azim
Published in J Gen Virol (2020)

Impact of virus subtype and host IFNL4 genotype on large-scale RNA structure formation in the genome of hepatitis C virus

by Simmonds, Peter, Cuypers, Lize, Irving, Will L., McLauchlan, John, Cooke, Graham S., Barnes, Ellie, Ansari, M. Azim
Published in RNA (2020)

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

by Bonsall, David, Ansari, M. Azim, Ip, Camilla, Trebes, Amy, Brown, Anthony, Klenerman, Paul, Buck, David, Piazza, Paolo, Barnes, Eleanor, Bowden, Rory
Published in F1000Res (2015)

Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance

by van Hal, Sebastiaan J., Ip, Camilla L. C., Ansari, M. Azim, Wilson, Daniel J., Espedido, Bjorn A., Jensen, Slade O., Bowden, Rory
Published in Microb Genom (2016)

Impact of Interferon Lambda 4 Genotype on Interferon‐Stimulated Gene Expression During Direct‐Acting Antiviral Therapy for Hepatitis C

by Ramamurthy, Narayan, Marchi, Emanuele, Ansari, M. Azim, Pedergnana, Vincent, Mclean, Angela, Hudson, Emma, Bowden, Rory, Spencer, Chris C.A., Barnes, Eleanor, Klenerman, Paul
Published in Hepatology (2018)

Insights From Deep Sequencing of the HBV Genome—Unique, Tiny, and Misunderstood

by McNaughton, Anna L., D’Arienzo, Valentina, Ansari, M. Azim, Lumley, Sheila F., Littlejohn, Margaret, Revill, Peter, McKeating, Jane A., Matthews, Philippa C.
Published in Gastroenterology (2019)

Changes in the prevalence of hepatitis B and C viral infections in Sindh province, Pakistan: Findings from two sero-surveys in 2007 and 2019

by Alamneh, Tesfa Sewunet, Walker, Josephine G., Lim, Aaron G., Alam, Ejaz, Hamid, Saeed, Foster, Graham R., Choudhry, Naheed, Ansari, M. Azim, Qureshi, Huma, Vickerman, Peter
Published in J Viral Hepat (2024)

Case Report: Application of hepatitis B virus (HBV) deep sequencing to distinguish between acute and chronic infection

by Downs, Louise O., McNaughton, Anna L., de Cesare, Mariateresa, Ansari, M. Azim, Martin, Jacqueline, Woodrow, Charles, Bowden, Rory, Collier, Jane, Barnes, Eleanor, Matthews, Philippa C.
Published in Wellcome Open Res (2021)

Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors

by Smith, David, Magri, Andrea, Bonsall, David, Ip, Camilla L.C., Trebes, Amy, Brown, Anthony, Piazza, Palo, Bowden, Rory, Nguyen, Dung, Ansari, M. Azim, Simmonds, Peter, Barnes, Eleanor
Published in Hepatology (2018)

The Design and Development of a Multi-HBV Antigen Encoded in Chimpanzee Adenoviral and Modified Vaccinia Ankara Viral Vectors; A Novel Therapeutic Vaccine Strategy against HBV

by Chinnakannan, Senthil K., Cargill, Tamsin N., Donnison, Timothy A., Ansari, M. Azim, Sebastian, Sarah, Lee, Lian Ni, Hutchings, Claire, Klenerman, Paul, Maini, Mala K., Evans, Tom, Barnes, Eleanor
Published in Vaccines (Basel) (2020)

Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype

by Goh, Cyndi, Burnham, Katie L., Ansari, M. Azim, de Cesare, Mariateresa, Golubchik, Tanya, Hutton, Paula, Overend, Lauren E., Davenport, Emma E., Hinds, Charles J., Bowden, Rory, Knight, Julian C.
Published in Sci Rep (2020)

Technical Validation of a Hepatitis C Virus Whole Genome Sequencing Assay for Detection of Genotype and Antiviral Resistance in the Clinical Pathway

by Manso, Carmen F., Bibby, David F., Lythgow, Kieren, Mohamed, Hodan, Myers, Richard, Williams, David, Piorkowska, Renata, Chan, Yuen T., Bowden, Rory, Ansari, M. Azim, Ip, Camilla L. C., Barnes, Eleanor, Bradshaw, Daniel, Mbisa, Jean L.
Published in Front Microbiol (2020)

HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

by McNaughton, Anna L., Lourenço, José, Hattingh, Louise, Adland, Emily, Daniels, Samantha, Van Zyl, Anriette, Akiror, Connie S., Wareing, Susan, Jeffery, Katie, Ansari, M. Azim, Klenerman, Paul, Goulder, Philip J. R., Gupta, Sunetra, Jooste, Pieter, Matthews, Philippa C.
Published in BMC Med (2019)

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

by McNaughton, Anna L., Roberts, Hannah E., Bonsall, David, de Cesare, Mariateresa, Mokaya, Jolynne, Lumley, Sheila F., Golubchik, Tanya, Piazza, Paolo, Martin, Jacqueline B., de Lara, Catherine, Brown, Anthony, Ansari, M. Azim, Bowden, Rory, Barnes, Eleanor, Matthews, Philippa C.
Published in Sci Rep (2019)