Inference of the Properties of the Recombination Process from Whole Bacterial Genomes

por Ansari, M. Azim, Didelot, Xavier
Publicado 2014

Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree

por Ansari, M. Azim, Didelot, Xavier
Publicado en Genetics (2016)

Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of...

por Simmonds, Peter, Ansari, M. Azim
Publicado en PLoS Pathog (2021)

Testing for dependence on tree structures

por Behr, Merle, Ansari, M. Azim, Munk, Axel, Holmes, Chris
Publicado en Proc Natl Acad Sci U S A (2020)

Efficient Inference of Recombination Hot Regions in Bacterial Genomes

por Yahara, Koji, Didelot, Xavier, Ansari, M. Azim, Sheppard, Samuel K., Falush, Daniel
Publicado 2014

Interferon lambda 4 variant rs12979860 is not associated with RAV NS5A Y93H in hepatitis C virus genotype 3a

por Pedergnana, Vincent, Smith, David, Klenerman, Paul, Barnes, Eleanor, Spencer, Chris C. A., Ansari, M. Azim
Publicado en Hepatology (2016)

Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences

por McNaughton, Anna L., Revill, Peter A., Littlejohn, Margaret, Matthews, Philippa C., Ansari, M. Azim
Publicado en J Gen Virol (2020)

Impact of virus subtype and host IFNL4 genotype on large-scale RNA structure formation in the genome of hepatitis C virus

por Simmonds, Peter, Cuypers, Lize, Irving, Will L., McLauchlan, John, Cooke, Graham S., Barnes, Ellie, Ansari, M. Azim
Publicado en RNA (2020)

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

por Bonsall, David, Ansari, M. Azim, Ip, Camilla, Trebes, Amy, Brown, Anthony, Klenerman, Paul, Buck, David, Piazza, Paolo, Barnes, Eleanor, Bowden, Rory
Publicado en F1000Res (2015)

Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance

por van Hal, Sebastiaan J., Ip, Camilla L. C., Ansari, M. Azim, Wilson, Daniel J., Espedido, Bjorn A., Jensen, Slade O., Bowden, Rory
Publicado en Microb Genom (2016)

Impact of Interferon Lambda 4 Genotype on Interferon‐Stimulated Gene Expression During Direct‐Acting Antiviral Therapy for Hepatitis C

por Ramamurthy, Narayan, Marchi, Emanuele, Ansari, M. Azim, Pedergnana, Vincent, Mclean, Angela, Hudson, Emma, Bowden, Rory, Spencer, Chris C.A., Barnes, Eleanor, Klenerman, Paul
Publicado en Hepatology (2018)

Insights From Deep Sequencing of the HBV Genome—Unique, Tiny, and Misunderstood

por McNaughton, Anna L., D’Arienzo, Valentina, Ansari, M. Azim, Lumley, Sheila F., Littlejohn, Margaret, Revill, Peter, McKeating, Jane A., Matthews, Philippa C.
Publicado en Gastroenterology (2019)

Changes in the prevalence of hepatitis B and C viral infections in Sindh province, Pakistan: Findings from two sero-surveys in 2007 and 2019

por Alamneh, Tesfa Sewunet, Walker, Josephine G., Lim, Aaron G., Alam, Ejaz, Hamid, Saeed, Foster, Graham R., Choudhry, Naheed, Ansari, M. Azim, Qureshi, Huma, Vickerman, Peter
Publicado en J Viral Hepat (2024)

Case Report: Application of hepatitis B virus (HBV) deep sequencing to distinguish between acute and chronic infection

por Downs, Louise O., McNaughton, Anna L., de Cesare, Mariateresa, Ansari, M. Azim, Martin, Jacqueline, Woodrow, Charles, Bowden, Rory, Collier, Jane, Barnes, Eleanor, Matthews, Philippa C.
Publicado en Wellcome Open Res (2021)

Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors

por Smith, David, Magri, Andrea, Bonsall, David, Ip, Camilla L.C., Trebes, Amy, Brown, Anthony, Piazza, Palo, Bowden, Rory, Nguyen, Dung, Ansari, M. Azim, Simmonds, Peter, Barnes, Eleanor
Publicado en Hepatology (2018)

The Design and Development of a Multi-HBV Antigen Encoded in Chimpanzee Adenoviral and Modified Vaccinia Ankara Viral Vectors; A Novel Therapeutic Vaccine Strategy against HBV

por Chinnakannan, Senthil K., Cargill, Tamsin N., Donnison, Timothy A., Ansari, M. Azim, Sebastian, Sarah, Lee, Lian Ni, Hutchings, Claire, Klenerman, Paul, Maini, Mala K., Evans, Tom, Barnes, Eleanor
Publicado en Vaccines (Basel) (2020)

Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype

por Goh, Cyndi, Burnham, Katie L., Ansari, M. Azim, de Cesare, Mariateresa, Golubchik, Tanya, Hutton, Paula, Overend, Lauren E., Davenport, Emma E., Hinds, Charles J., Bowden, Rory, Knight, Julian C.
Publicado en Sci Rep (2020)

Technical Validation of a Hepatitis C Virus Whole Genome Sequencing Assay for Detection of Genotype and Antiviral Resistance in the Clinical Pathway

por Manso, Carmen F., Bibby, David F., Lythgow, Kieren, Mohamed, Hodan, Myers, Richard, Williams, David, Piorkowska, Renata, Chan, Yuen T., Bowden, Rory, Ansari, M. Azim, Ip, Camilla L. C., Barnes, Eleanor, Bradshaw, Daniel, Mbisa, Jean L.
Publicado en Front Microbiol (2020)

HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

por McNaughton, Anna L., Lourenço, José, Hattingh, Louise, Adland, Emily, Daniels, Samantha, Van Zyl, Anriette, Akiror, Connie S., Wareing, Susan, Jeffery, Katie, Ansari, M. Azim, Klenerman, Paul, Goulder, Philip J. R., Gupta, Sunetra, Jooste, Pieter, Matthews, Philippa C.
Publicado en BMC Med (2019)

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

por McNaughton, Anna L., Roberts, Hannah E., Bonsall, David, de Cesare, Mariateresa, Mokaya, Jolynne, Lumley, Sheila F., Golubchik, Tanya, Piazza, Paolo, Martin, Jacqueline B., de Lara, Catherine, Brown, Anthony, Ansari, M. Azim, Bowden, Rory, Barnes, Eleanor, Matthews, Philippa C.
Publicado en Sci Rep (2019)