Inference of the Properties of the Recombination Process from Whole Bacterial Genomes

بواسطة Ansari, M. Azim, Didelot, Xavier
منشور في 2014

Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree

بواسطة Ansari, M. Azim, Didelot, Xavier
الحاوية / القاعدة Genetics (2016)

Extensive C->U transition biases in the genomes of a wide range of mammalian RNA viruses; potential associations with transcriptional mutations, damage- or host-mediated editing of...

بواسطة Simmonds, Peter, Ansari, M. Azim
الحاوية / القاعدة PLoS Pathog (2021)

Testing for dependence on tree structures

بواسطة Behr, Merle, Ansari, M. Azim, Munk, Axel, Holmes, Chris
الحاوية / القاعدة Proc Natl Acad Sci U S A (2020)

Efficient Inference of Recombination Hot Regions in Bacterial Genomes

بواسطة Yahara, Koji, Didelot, Xavier, Ansari, M. Azim, Sheppard, Samuel K., Falush, Daniel
منشور في 2014

Interferon lambda 4 variant rs12979860 is not associated with RAV NS5A Y93H in hepatitis C virus genotype 3a

بواسطة Pedergnana, Vincent, Smith, David, Klenerman, Paul, Barnes, Eleanor, Spencer, Chris C. A., Ansari, M. Azim
الحاوية / القاعدة Hepatology (2016)

Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences

بواسطة McNaughton, Anna L., Revill, Peter A., Littlejohn, Margaret, Matthews, Philippa C., Ansari, M. Azim
الحاوية / القاعدة J Gen Virol (2020)

Impact of virus subtype and host IFNL4 genotype on large-scale RNA structure formation in the genome of hepatitis C virus

بواسطة Simmonds, Peter, Cuypers, Lize, Irving, Will L., McLauchlan, John, Cooke, Graham S., Barnes, Ellie, Ansari, M. Azim
الحاوية / القاعدة RNA (2020)

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens

بواسطة Bonsall, David, Ansari, M. Azim, Ip, Camilla, Trebes, Amy, Brown, Anthony, Klenerman, Paul, Buck, David, Piazza, Paolo, Barnes, Eleanor, Bowden, Rory
الحاوية / القاعدة F1000Res (2015)

Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance

بواسطة van Hal, Sebastiaan J., Ip, Camilla L. C., Ansari, M. Azim, Wilson, Daniel J., Espedido, Bjorn A., Jensen, Slade O., Bowden, Rory
الحاوية / القاعدة Microb Genom (2016)

Impact of Interferon Lambda 4 Genotype on Interferon‐Stimulated Gene Expression During Direct‐Acting Antiviral Therapy for Hepatitis C

بواسطة Ramamurthy, Narayan, Marchi, Emanuele, Ansari, M. Azim, Pedergnana, Vincent, Mclean, Angela, Hudson, Emma, Bowden, Rory, Spencer, Chris C.A., Barnes, Eleanor, Klenerman, Paul
الحاوية / القاعدة Hepatology (2018)

Insights From Deep Sequencing of the HBV Genome—Unique, Tiny, and Misunderstood

بواسطة McNaughton, Anna L., D’Arienzo, Valentina, Ansari, M. Azim, Lumley, Sheila F., Littlejohn, Margaret, Revill, Peter, McKeating, Jane A., Matthews, Philippa C.
الحاوية / القاعدة Gastroenterology (2019)

Changes in the prevalence of hepatitis B and C viral infections in Sindh province, Pakistan: Findings from two sero-surveys in 2007 and 2019

بواسطة Alamneh, Tesfa Sewunet, Walker, Josephine G., Lim, Aaron G., Alam, Ejaz, Hamid, Saeed, Foster, Graham R., Choudhry, Naheed, Ansari, M. Azim, Qureshi, Huma, Vickerman, Peter
الحاوية / القاعدة J Viral Hepat (2024)

Case Report: Application of hepatitis B virus (HBV) deep sequencing to distinguish between acute and chronic infection

بواسطة Downs, Louise O., McNaughton, Anna L., de Cesare, Mariateresa, Ansari, M. Azim, Martin, Jacqueline, Woodrow, Charles, Bowden, Rory, Collier, Jane, Barnes, Eleanor, Matthews, Philippa C.
الحاوية / القاعدة Wellcome Open Res (2021)

Resistance analysis of genotype 3 hepatitis C virus indicates subtypes inherently resistant to nonstructural protein 5A inhibitors

بواسطة Smith, David, Magri, Andrea, Bonsall, David, Ip, Camilla L.C., Trebes, Amy, Brown, Anthony, Piazza, Palo, Bowden, Rory, Nguyen, Dung, Ansari, M. Azim, Simmonds, Peter, Barnes, Eleanor
الحاوية / القاعدة Hepatology (2018)

The Design and Development of a Multi-HBV Antigen Encoded in Chimpanzee Adenoviral and Modified Vaccinia Ankara Viral Vectors; A Novel Therapeutic Vaccine Strategy against HBV

بواسطة Chinnakannan, Senthil K., Cargill, Tamsin N., Donnison, Timothy A., Ansari, M. Azim, Sebastian, Sarah, Lee, Lian Ni, Hutchings, Claire, Klenerman, Paul, Maini, Mala K., Evans, Tom, Barnes, Eleanor
الحاوية / القاعدة Vaccines (Basel) (2020)

Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype

بواسطة Goh, Cyndi, Burnham, Katie L., Ansari, M. Azim, de Cesare, Mariateresa, Golubchik, Tanya, Hutton, Paula, Overend, Lauren E., Davenport, Emma E., Hinds, Charles J., Bowden, Rory, Knight, Julian C.
الحاوية / القاعدة Sci Rep (2020)

Technical Validation of a Hepatitis C Virus Whole Genome Sequencing Assay for Detection of Genotype and Antiviral Resistance in the Clinical Pathway

بواسطة Manso, Carmen F., Bibby, David F., Lythgow, Kieren, Mohamed, Hodan, Myers, Richard, Williams, David, Piorkowska, Renata, Chan, Yuen T., Bowden, Rory, Ansari, M. Azim, Ip, Camilla L. C., Barnes, Eleanor, Bradshaw, Daniel, Mbisa, Jean L.
الحاوية / القاعدة Front Microbiol (2020)

HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

بواسطة McNaughton, Anna L., Lourenço, José, Hattingh, Louise, Adland, Emily, Daniels, Samantha, Van Zyl, Anriette, Akiror, Connie S., Wareing, Susan, Jeffery, Katie, Ansari, M. Azim, Klenerman, Paul, Goulder, Philip J. R., Gupta, Sunetra, Jooste, Pieter, Matthews, Philippa C.
الحاوية / القاعدة BMC Med (2019)

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

بواسطة McNaughton, Anna L., Roberts, Hannah E., Bonsall, David, de Cesare, Mariateresa, Mokaya, Jolynne, Lumley, Sheila F., Golubchik, Tanya, Piazza, Paolo, Martin, Jacqueline B., de Lara, Catherine, Brown, Anthony, Ansari, M. Azim, Bowden, Rory, Barnes, Eleanor, Matthews, Philippa C.
الحاوية / القاعدة Sci Rep (2019)