Methyllysine Reader Plant Homeodomain (PHD) Finger Protein 20-like 1 (PHF20L1) Antagonizes DNA (Cytosine-5) Methyltransferase 1 (DNMT1) Proteasomal Degradation

by Estève, Pierre-Olivier, Terragni, Jolyon, Deepti, Kanneganti, Chin, Hang Gyeong, Dai, Nan, Espejo, Alexsandra, Corrêa, Ivan R., Bedford, Mark T., Pradhan, Sriharsa
Published 2014

The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA–Directed DNA Methylation in Arabidopsis thaliana

by Henderson, Ian R., Deleris, Angelique, Wong, William, Zhong, Xuehua, Chin, Hang Gyeong, Horwitz, Gregory A., Kelly, Krystyna A., Pradhan, Sriharsa, Jacobsen, Steven E.
Published 2010

Identification of DNMT1 Selective Antagonists Using a Novel Scintillation Proximity Assay

by Kilgore, Jessica A., Du, Xinlin, Melito, Lisa, Wei, Shuguang, Wang, Changguang, Chin, Hang Gyeong, Posner, Bruce, Pradhan, Sriharsa, Ready, Joseph M., Williams, Noelle S.
Published 2013

DNA methylation and differentiation: HOX genes in muscle cells

by Tsumagari, Koji, Baribault, Carl, Terragni, Jolyon, Chandra, Sruti, Renshaw, Chloe, Sun, Zhiyi, Song, Lingyun, Crawford, Gregory E, Pradhan, Sriharsa, Lacey, Michelle, Ehrlich, Melanie
Published 2013

Shotgun bisulfite sequencing of the Arabidopsis genome reveals DNA methylation patterning

by Cokus, Shawn J., Feng, Suhua, Zhang, Xiaoyu, Chen, Zugen, Merriman, Barry, Haudenschild, Christian D., Pradhan, Sriharsa, Nelson, Stanley F., Pellegrini, Matteo, Jacobsen, Steven E.
Published 2008

Tissue-specific Distribution and Dynamic Changes of 5-Hydroxymethylcytosine in Mammalian Genomes

by Kinney, Shannon Morey, Chin, Hang Gyeong, Vaisvila, Romualdas, Bitinaite, Jurate, Zheng, Yu, Estève, Pierre-Olivier, Feng, Suhua, Stroud, Hume, Jacobsen, Steven E., Pradhan, Sriharsa
Published 2011

Universal NicE-seq for high-resolution accessible chromatin profiling for formaldehyde-fixed and FFPE tissues

by Chin, Hang Gyeong, Sun, Zhiyi, Vishnu, Udayakumar S., Hao, Pengying, Cejas, Paloma, Spracklin, George, Estève, Pierre-Olivier, Xu, Shuang-yong, Long, Henry W., Pradhan, Sriharsa
Published in Clin Epigenetics (2020)

High-Resolution Enzymatic Mapping of Genomic 5-Hydroxymethylcytosine in Mouse Embryonic Stem Cells

by Sun, Zhiyi, Terragni, Jolyon, Borgaro, Janine G., Liu, Yiwei, Yu, Ling, Guan, Shengxi, Wang, Hua, Sun, Dapeng, Cheng, Xiaodong, Zhu, Zhenyu, Pradhan, Sriharsa, Zheng, Yu
Published 2013

Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3

by Lindroth, Anders M, Shultis, David, Jasencakova, Zuzana, Fuchs, Jörg, Johnson, Lianna, Schubert, Daniel, Patnaik, Debasis, Pradhan, Sriharsa, Goodrich, Justin, Schubert, Ingo, Jenuwein, Thomas, Khorasanizadeh, Sepideh, Jacobsen, Steven E
Published 2004

Mediator Links Epigenetic Silencing of Neuronal Gene Expression with X-Linked Mental Retardation

by Ding, Ning, Zhou, Haiying, Esteve, Pierre-Olivier, Chin, Hang Gyeong, Kim, Seokjoong, Xu, Xuan, Joseph, Sumy M., Friez, Michael J., Schwartz, Charles E., Pradhan, Sriharsa, Boyer, Thomas G.
Published 2008

Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3

by Lindroth, Anders M, Shultis, David, Jasencakova, Zuzana, Fuchs, Jörg, Johnson, Lianna, Schubert, Daniel, Patnaik, Debasis, Pradhan, Sriharsa, Goodrich, Justin, Schubert, Ingo, Jenuwein, Thomas, Khorasanizadeh, Sepideh, Jacobsen, Steven E
Published 2011

A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA

by Feehery, George R., Yigit, Erbay, Oyola, Samuel O., Langhorst, Bradley W., Schmidt, Victor T., Stewart, Fiona J., Dimalanta, Eileen T., Amaral-Zettler, Linda A., Davis, Theodore, Quail, Michael A., Pradhan, Sriharsa
Published 2013

Binding of 14-3-3 reader proteins to phosphorylated DNMT1 facilitates aberrant DNA methylation and gene expression

by Estève, Pierre-Olivier, Zhang, Guoqiang, Ponnaluri, V.K. Chaithanya, Deepti, Kanneganti, Chin, Hang Gyeong, Dai, Nan, Sagum, Cari, Black, Karynne, Corrêa, Ivan R., Bedford, Mark T., Cheng, Xiaodong, Pradhan, Sriharsa
Published in Nucleic Acids Res (2016)

A novel requirement for DROSHA in maintenance of mammalian CG methylation

by Stathopoulou, Athanasia, Chhetri, Jyoti B., Ambrose, John C., Estève, Pierre-Olivier, Ji, Lexiang, Erdjument-Bromage, Hediye, Zhang, Guoqiang, Neubert, Thomas A., Pradhan, Sriharsa, Herrero, Javier, Schmitz, Robert J., Ooi, Steen K.T.
Published in Nucleic Acids Res (2017)

A novel requirement for DROSHA in maintenance of mammalian CG methylation

by Stathopoulou, Athanasia, Chhetri, Jyoti B., Ambrose, John C., Estève, Pierre-Olivier, Ji, Lexiang, Erdjument-Bromage, Hediye, Zhang, Guoqiang, Neubert, Thomas A., Pradhan, Sriharsa, Herrero, Javier, Schmitz, Robert J., Ooi, Steen K.T.
Published in Nucleic Acids Res (2017)

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

by Cohen-Karni, Devora, Xu, Derrick, Apone, Lynne, Fomenkov, Alexey, Sun, Zhiyi, Davis, Paul J., Morey Kinney, Shannon R., Yamada-Mabuchi, Megumu, Xu, Shuang-yong, Davis, Theodore, Pradhan, Sriharsa, Roberts, Richard J., Zheng, Yu
Published 2011

Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base reso...

by Sun, Zhiyi, Vaisvila, Romualdas, Hussong, Laura-Madison, Yan, Bo, Baum, Chloé, Saleh, Lana, Samaranayake, Mala, Guan, Shengxi, Dai, Nan, Corrêa, Ivan R., Pradhan, Sriharsa, Davis, Theodore B., Evans, Thomas C., Ettwiller, Laurence M.
Published in Genome Res (2021)

Dual Binding of Chromomethylase Domains to H3K9me2-containing Nucleosomes Directs DNA Methylation in Plants

by Du, Jiamu, Zhong, Xuehua, Bernatavichute, Yana V., Stroud, Hume, Feng, Suhua, Caro, Elena, Vashisht, Ajay A., Terragni, Jolyon, Chin, Hang Gyeong, Tu, Andy, Hetzel, Jonathan, Wohlschlegel, James A., Pradhan, Sriharsa, Patel, Dinshaw J., Jacobsen, Steven E.
Published 2012

Conservation and divergence of methylation patterning in plants and animals

by Feng, Suhua, Cokus, Shawn J., Zhang, Xiaoyu, Chen, Pao-Yang, Bostick, Magnolia, Goll, Mary G., Hetzel, Jonathan, Jain, Jayati, Strauss, Steven H., Halpern, Marnie E., Ukomadu, Chinweike, Sadler, Kirsten C., Pradhan, Sriharsa, Pellegrini, Matteo, Jacobsen, Steven E.
Published 2010

Epigenetic reprogramming enables the primordial germ cell-to-gonocyte transition

by Hill, Peter W. S., Leitch, Harry G., Requena, Cristina E., Sun, Zhiyi, Amouroux, Rachel, Roman-Trufero, Monica, Borkowska, Malgorzata, Terragni, Jolyon, Vaisvila, Romualdas, Linnett, Sarah, Bagci, Hakan, Dharmalingham, Gopuraja, Haberle, Vanja, Lenhard, Boris, Zheng, Yu, Pradhan, Sriharsa, Hajkova, Petra
Published in Nature (2018)