Notch signaling genes: Myogenic DNA hypomethylation and 5-hydroxymethylcytosine

by Terragni, Jolyon, Zhang, Guoqiang, Sun, Zhiyi, Pradhan, Sriharsa, Song, Lingyun, Crawford, Gregory E, Lacey, Michelle, Ehrlich, Melanie
Published 2014

DNA methylation and differentiation: HOX genes in muscle cells

by Tsumagari, Koji, Baribault, Carl, Terragni, Jolyon, Chandra, Sruti, Renshaw, Chloe, Sun, Zhiyi, Song, Lingyun, Crawford, Gregory E, Pradhan, Sriharsa, Lacey, Michelle, Ehrlich, Melanie
Published 2013

Universal NicE-seq for high-resolution accessible chromatin profiling for formaldehyde-fixed and FFPE tissues

by Chin, Hang Gyeong, Sun, Zhiyi, Vishnu, Udayakumar S., Hao, Pengying, Cejas, Paloma, Spracklin, George, Estève, Pierre-Olivier, Xu, Shuang-yong, Long, Henry W., Pradhan, Sriharsa
Published in Clin Epigenetics (2020)

High-Resolution Enzymatic Mapping of Genomic 5-Hydroxymethylcytosine in Mouse Embryonic Stem Cells

by Sun, Zhiyi, Terragni, Jolyon, Borgaro, Janine G., Liu, Yiwei, Yu, Ling, Guan, Shengxi, Wang, Hua, Sun, Dapeng, Cheng, Xiaodong, Zhu, Zhenyu, Pradhan, Sriharsa, Zheng, Yu
Published 2013

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies

by Cohen-Karni, Devora, Xu, Derrick, Apone, Lynne, Fomenkov, Alexey, Sun, Zhiyi, Davis, Paul J., Morey Kinney, Shannon R., Yamada-Mabuchi, Megumu, Xu, Shuang-yong, Davis, Theodore, Pradhan, Sriharsa, Roberts, Richard J., Zheng, Yu
Published 2011

Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base reso...

by Sun, Zhiyi, Vaisvila, Romualdas, Hussong, Laura-Madison, Yan, Bo, Baum, Chloé, Saleh, Lana, Samaranayake, Mala, Guan, Shengxi, Dai, Nan, Corrêa, Ivan R., Pradhan, Sriharsa, Davis, Theodore B., Evans, Thomas C., Ettwiller, Laurence M.
Published in Genome Res (2021)

Epigenetic reprogramming enables the primordial germ cell-to-gonocyte transition

by Hill, Peter W. S., Leitch, Harry G., Requena, Cristina E., Sun, Zhiyi, Amouroux, Rachel, Roman-Trufero, Monica, Borkowska, Malgorzata, Terragni, Jolyon, Vaisvila, Romualdas, Linnett, Sarah, Bagci, Hakan, Dharmalingham, Gopuraja, Haberle, Vanja, Lenhard, Boris, Zheng, Yu, Pradhan, Sriharsa, Hajkova, Petra
Published in Nature (2018)

Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA

by Vaisvila, Romualdas, Ponnaluri, V.K. Chaithanya, Sun, Zhiyi, Langhorst, Bradley W., Saleh, Lana, Guan, Shengxi, Dai, Nan, Campbell, Matthew A., Sexton, Brittany S., Marks, Katherine, Samaranayake, Mala, Samuelson, James C., Church, Heidi E., Tamanaha, Esta, Corrêa, Ivan R., Pradhan, Sriharsa, Dimalanta, Eileen T., Evans, Thomas C., Williams, Louise, Davis, Theodore B.
Published in Genome Res (2021)