Two-Step Recruitment of RNA-Directed DNA Methylation to Tandem Repeats

by Chan, Simon W.-L, Zhang, Xiaoyu, Bernatavichute, Yana V, Jacobsen, Steven E
Published 2006

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

by Bernatavichute, Yana V., Zhang, Xiaoyu, Cokus, Shawn, Pellegrini, Matteo, Jacobsen, Steven E.
Published 2008

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

by Zhang, Xiaoyu, Bernatavichute, Yana V, Cokus, Shawn, Pellegrini, Matteo, Jacobsen, Steven E
Published 2009

Role of RNA polymerase IV in plant small RNA metabolism

by Zhang, Xiaoyu, Henderson, Ian R., Lu, Cheng, Green, Pamela J., Jacobsen, Steven E.
Published 2007

The SRA methyl-cytosine-binding domain links DNA and histone methylation

by Johnson, Lianna M., Bostick, Magnolia, Zhang, Xiaoyu, Kraft, Edward, Henderson, Ian, Callis, Judy, Jacobsen, Steven E.
Published 2007

Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis

by Zhang, Xiaoyu, Clarenz, Oliver, Cokus, Shawn, Bernatavichute, Yana V, Pellegrini, Matteo, Goodrich, Justin, Jacobsen, Steven E
Published 2007

RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis

by Chan, Simon W.-L, Henderson, Ian R, Zhang, Xiaoyu, Shah, Govind, Chien, Jason S.-C, Jacobsen, Steven E
Published 2006

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

by Sequeira-Mendes, Joana, Aragüez, Irene, Peiró, Ramón, Mendez-Giraldez, Raul, Zhang, Xiaoyu, Jacobsen, Steven E., Bastolla, Ugo, Gutierrez, Crisanto
Published 2014

Shotgun bisulfite sequencing of the Arabidopsis genome reveals DNA methylation patterning

by Cokus, Shawn J., Feng, Suhua, Zhang, Xiaoyu, Chen, Zugen, Merriman, Barry, Haudenschild, Christian D., Pradhan, Sriharsa, Nelson, Stanley F., Pellegrini, Matteo, Jacobsen, Steven E.
Published 2008

Genome-wide mapping of Arabidopsis origins of DNA replication and their associated epigenetic marks

by Costas, Celina, de la Paz Sanchez, Maria, Stroud, Hume, Yu, Yanchun, Oliveros, Juan Carlos, Feng, Suhua, Benguria, Alberto, López-Vidriero, Irene, Zhang, Xiaoyu, Solano, Roberto, Jacobsen, Steven E., Gutierrez, Crisanto
Published 2011

Conservation and divergence of methylation patterning in plants and animals

by Feng, Suhua, Cokus, Shawn J., Zhang, Xiaoyu, Chen, Pao-Yang, Bostick, Magnolia, Goll, Mary G., Hetzel, Jonathan, Jain, Jayati, Strauss, Steven H., Halpern, Marnie E., Ukomadu, Chinweike, Sadler, Kirsten C., Pradhan, Sriharsa, Pellegrini, Matteo, Jacobsen, Steven E.
Published 2010

Relationship between nucleosome positioning and DNA methylation

by Chodavarapu, Ramakrishna K., Feng, Suhua, Bernatavichute, Yana V., Chen, Pao-Yang, Stroud, Hume, Yu, Yanchun, Hetzel, Jonathan, Kuo, Frank, Kim, Jin, Cokus, Shawn J., Casero, David, Bernal, Maria, Huijser, Peter, Clark, Amander T., Krämer, Ute, Merchant, Sabeeha S., Zhang, Xiaoyu, Jacobsen, Steven E., Pellegrini, Matteo
Published 2010

On the origin and evolutionary consequences of gene body DNA methylation

by Bewick, Adam J., Ji, Lexiang, Niederhuth, Chad E., Willing, Eva-Maria, Hofmeister, Brigitte T., Shi, Xiuling, Wang, Li, Lu, Zefu, Rohr, Nicholas A., Hartwig, Benjamin, Kiefer, Christiane, Deal, Roger B., Schmutz, Jeremy, Grimwood, Jane, Stroud, Hume, Jacobsen, Steven E., Schneeberger, Korbinian, Zhang, Xiaoyu, Schmitz, Robert J.
Published in Proc Natl Acad Sci U S A (2016)