Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation

by Widman, Nicolas, Feng, Suhua, Jacobsen, Steven E, Pellegrini, Matteo
Published 2014

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

by Bernatavichute, Yana V., Zhang, Xiaoyu, Cokus, Shawn, Pellegrini, Matteo, Jacobsen, Steven E.
Published 2008

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

by Zhang, Xiaoyu, Bernatavichute, Yana V, Cokus, Shawn, Pellegrini, Matteo, Jacobsen, Steven E
Published 2009

Genome-wide Hi-C analyses in wild type and mutants reveal high-resolution chromatin interactions in Arabidopsis

by Feng, Suhua, Cokus, Shawn J., Schubert, Veit, Zhai, Jixian, Pellegrini, Matteo, Jacobsen, Steven E.
Published in Mol Cell (2014)

Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis

by Zhang, Xiaoyu, Clarenz, Oliver, Cokus, Shawn, Bernatavichute, Yana V, Pellegrini, Matteo, Goodrich, Justin, Jacobsen, Steven E
Published 2007

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

by Foret, Sylvain, Kucharski, Robert, Pellegrini, Matteo, Feng, Suhua, Jacobsen, Steven E., Robinson, Gene E., Maleszka, Ryszard
Published 2012

Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by Aid deficiency

by Popp, Christian, Dean, Wendy, Feng, Suhua, Cokus, Shawn J., Andrews, Simon, Pellegrini, Matteo, Jacobsen, Steven E., Reik, Wolf
Published 2010

Plants regenerated from tissue culture contain stable epigenome changes in rice

by Stroud, Hume, Ding, Bo, Simon, Stacey A, Feng, Suhua, Bellizzi, Maria, Pellegrini, Matteo, Wang, Guo-Liang, Meyers, Blake C, Jacobsen, Steven E
Published 2013

Shotgun bisulfite sequencing of the Arabidopsis genome reveals DNA methylation patterning

by Cokus, Shawn J., Feng, Suhua, Zhang, Xiaoyu, Chen, Zugen, Merriman, Barry, Haudenschild, Christian D., Pradhan, Sriharsa, Nelson, Stanley F., Pellegrini, Matteo, Jacobsen, Steven E.
Published 2008

Transcriptome and methylome interactions in rice hybrids

by Chodavarapu, Ramakrishna K., Feng, Suhua, Ding, Bo, Simon, Stacey A., Lopez, David, Jia, Yulin, Wang, Guo-Liang, Meyers, Blake C., Jacobsen, Steven E., Pellegrini, Matteo
Published 2012

ATXR5 and ATXR6 are novel H3K27 monomethyltransferases required for chromatin structure and gene silencing

by Jacob, Yannick, Feng, Suhua, LeBlanc, Chantal A., Bernatavichute, Yana V., Stroud, Hume, Cokus, Shawn, Johnson, Lianna M., Pellegrini, Matteo, Jacobsen, Steven E., Michaels, Scott D.
Published 2009

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse

by Morselli, Marco, Pastor, William A, Montanini, Barbara, Nee, Kevin, Ferrari, Roberto, Fu, Kai, Bonora, Giancarlo, Rubbi, Liudmilla, Clark, Amander T, Ottonello, Simone, Jacobsen, Steven E, Pellegrini, Matteo
Published in eLife (2015)

Correction: In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse

by Morselli, Marco, Pastor, William A, Montanini, Barbara, Nee, Kevin, Ferrari, Roberto, Fu, Kai, Bonora, Giancarlo, Rubbi, Liudmilla, Clark, Amander T, Ottonello, Simone, Jacobsen, Steven E, Pellegrini, Matteo
Published in eLife (2017)

Identification of genes required for de novo DNA methylation in Arabidopsis

by Greenberg, Maxim VC, Ausin, Israel, Chan, Simon WL, Cokus, Shawn J, Cuperus, Josh T, Feng, Suhua, Law, Julie A, Chu, Carolyn, Pellegrini, Matteo, Carrington, James C, Jacobsen, Steven E
Published 2011

SRA/SET domain-containing proteins link RNA polymerase V occupancy to DNA methylation

by Johnson, Lianna M., Du, Jiamu, Hale, Christopher J., Bischof, Sylvain, Feng, Suhua, Chodavarapu, Ramakrishna K., Zhong, Xuehua, Marson, Giuseppe, Pellegrini, Matteo, Segal, David J., Patel, Dinshaw J., Jacobsen, Steven E.
Published 2014

Stage-Specific Roles for Tet1 and Tet2 in DNA Demethylation in Primordial Germ Cells

by Vincent, John J., Huang, Yun, Chen, Pao-Yang, Feng, Suhua, Calvopiña, Joseph H., Nee, Kevin, Lee, Serena A., Le, Thuc, Yoon, Alexander J., Faull, Kym, Fan, Guoping, Rao, Anjana, Jacobsen, Steven E., Pellegrini, Matteo, Clark, Amander T.
Published 2013

Conservation and divergence of methylation patterning in plants and animals

by Feng, Suhua, Cokus, Shawn J., Zhang, Xiaoyu, Chen, Pao-Yang, Bostick, Magnolia, Goll, Mary G., Hetzel, Jonathan, Jain, Jayati, Strauss, Steven H., Halpern, Marnie E., Ukomadu, Chinweike, Sadler, Kirsten C., Pradhan, Sriharsa, Pellegrini, Matteo, Jacobsen, Steven E.
Published 2010

Relationship between nucleosome positioning and DNA methylation

by Chodavarapu, Ramakrishna K., Feng, Suhua, Bernatavichute, Yana V., Chen, Pao-Yang, Stroud, Hume, Yu, Yanchun, Hetzel, Jonathan, Kuo, Frank, Kim, Jin, Cokus, Shawn J., Casero, David, Bernal, Maria, Huijser, Peter, Clark, Amander T., Krämer, Ute, Merchant, Sabeeha S., Zhang, Xiaoyu, Jacobsen, Steven E., Pellegrini, Matteo
Published 2010