Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems

by Papikian, Ashot, Liu, Wanlu, Gallego-Bartolomé, Javier, Jacobsen, Steven E.
Published in Nat Commun (2019)

Naïve human pluripotent cells feature a methylation landscape devoid of blastocyst or germline memory

by Pastor, William A., Chen, Di, Liu, Wanlu, Kim, Rachel, Sahakyan, Anna, Lukianchikov, Anastasia, Plath, Kathrin, Jacobsen, Steven E., Clark, Amander T.
Published in Cell Stem Cell (2016)

DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis

by Zhong, Zhenhui, Feng, Suhua, Duttke, Sascha H., Potok, Magdalena E., Zhang, Yiwei, Gallego-Bartolomé, Javier, Liu, Wanlu, Jacobsen, Steven E.
Published in Proc Natl Acad Sci U S A (2021)

Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain

by Gallego-Bartolomé, Javier, Gardiner, Jason, Liu, Wanlu, Papikian, Ashot, Ghoshal, Basudev, Kuo, Hsuan Yu, Zhao, Jenny Miao-Chi, Segal, David J., Jacobsen, Steven E.
Published in Proc Natl Acad Sci U S A (2018)

A nucleosome bridging mechanism for activation of a maintenance DNA methyltransferase

by Stoddard, Caitlin I., Feng, Suhua, Campbell, Melody G., Liu, Wanlu, Wang, Haifeng, Zhong, Xuehua, Bernatavichute, Yana, Cheng, Yifan, Jacobsen, Steven E., Narlikar, Geeta J.
Published in Mol Cell (2018)

Multilevel modulation of light signaling by GIGANTEA regulates both the output and pace of the circadian clock

by Nohales, Maria A., Liu, Wanlu, Duffy, Tomas, Nozue, Kazunari, Sawa, Mariko, Pruneda-Paz, Jose L., Maloof, Julin N., Jacobsen, Steven E., Kay, Steve A.
Published in Dev Cell (2019)

Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase

by Liu, Wanlu, Gallego-Bartolomé, Javier, Zhou, Yuxing, Zhong, Zhenhui, Wang, Ming, Wongpalee, Somsakul Pop, Gardiner, Jason, Feng, Suhua, Kuo, Peggy Hsuanyu, Jacobsen, Steven E.
Published in Nat Commun (2021)

The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation

by Chen, Di, Liu, Wanlu, Zimmerman, Jill, Pastor, William A., Kim, Rachel, Hosohama, Linzi, Ho, Jamie, Aslanyan, Marianna, Gell, Joanna J., Jacobsen, Steven E., Clark, Amander T.
Published in Cell Rep (2018)

TFAP2C regulates transcription in human naive pluripotency by opening enhancers

by Pastor, William A., Liu, Wanlu, Chen, Di, Ho, Jamie, Kim, Rachel, Hunt, Timothy J., Lukianchikov, Anastasia, Liu, Xiaodong, Polo, Jose M., Jacobsen, Steven E., Clark, Amander T.
Published in Nat Cell Biol (2018)

Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis

by Gallego-Bartolomé, Javier, Liu, Wanlu, Kuo, Peggy Hsuanyu, Feng, Suhua, Ghoshal, Basudev, Gardiner, Jason, Zhao, Jenny Miao-Chi, Park, Soo Young, Chory, Joanne, Jacobsen, Steven E.
Published in Cell (2019)

Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition

by Potok, Magdalena E., Wang, Yafei, Xu, Linhao, Zhong, Zhenhui, Liu, Wanlu, Feng, Suhua, Naranbaatar, Bilguudei, Rayatpisheh, Shima, Wang, Zonghua, Wohlschlegel, James A., Ausin, Israel, Jacobsen, Steven E.
Published in Nat Commun (2019)

Germline competency of human embryonic stem cells depends on eomesodermin(†)

by Chen, Di, Liu, Wanlu, Lukianchikov, Anastasia, Hancock, Grace V, Zimmerman, Jill, Lowe, Matthew G, Kim, Rachel, Galic, Zoran, Irie, Naoko, Surani, M Azim, Jacobsen, Steven E, Clark, Amander T
Published in Biol Reprod (2017)

RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis

by Liu, Wanlu, Duttke, Sascha H., Hetzel, Jonathan, Groth, Martin, Feng, Suhua, Gallego-Bartolome, Javier, Zhong, Zhenhui, Kuo, Hsuan Yu, Wang, Zonghua, Zhai, Jixian, Chory, Joanne, Jacobsen, Steven E.
Published in Nat Plants (2018)

MORC1 represses transposable elements in the mouse male germline

by Pastor, William A., Stroud, Hume, Nee, Kevin, Liu, Wanlu, Pezic, Dubravka, Manakov, Sergei, Lee, Serena A., Moissiard, Guillaume, Zamudio, Natasha, Bourc’his, Déborah, Aravin, Alexei A., Clark, Amander T., Jacobsen, Steven E.
Published in Nat Commun (2014)

Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes

by Harris, C. Jake, Husmann, Dylan, Liu, Wanlu, Kasmi, Farid El, Wang, Haifeng, Papikian, Ashot, Pastor, William A., Moissiard, Guillaume, Vashisht, Ajay A., Dangl, Jeffery L., Wohlschlegel, James A., Jacobsen, Steven E.
Published in PLoS Genet (2016)

DNA methylome of the 20-gigabase Norway spruce genome

by Ausin, Israel, Feng, Suhua, Yu, Chaowei, Liu, Wanlu, Kuo, Hsuan Yu, Jacobsen, Elise L., Zhai, Jixian, Gallego-Bartolome, Javier, Wang, Lin, Egertsdotter, Ulrika, Street, Nathaniel R., Jacobsen, Steven E., Wang, Haifeng
Published in Proc Natl Acad Sci U S A (2016)

Erratum: MORC1 represses transposable elements in the mouse male germline

by Pastor, William A., Stroud, Hume, Nee, Kevin, Liu, Wanlu, Pezic, Dubravka, Manakov, Sergei, Lee, Serena A., Moissiard, Guillaume, Zamudio, Natasha, Bourc’his, Déborah, Aravin, Alexei A., Clark, Amander T., Jacobsen, Steven E.
Published in Nat Commun (2015)

Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin

by Li, Sisi, Yen, Linda, Pastor, William A., Johnston, Jonathan B., Du, Jiamu, Shew, Colin J., Liu, Wanlu, Ho, Jamie, Stender, Bryan, Clark, Amander T., Burlingame, Alma L., Daxinger, Lucia, Patel, Dinshaw J., Jacobsen, Steven E.
Published in Proc Natl Acad Sci U S A (2016)

One precursor One siRNA model for Pol IV- dependent siRNAs Biogenesis

by Zhai, Jixian, Bischof, Sylvain, Wang, Haifeng, Feng, Suhua, Lee, Tzuu-fen, Teng, Chong, Chen, Xinyuan, Park, Soo Young, Liu, Linshan, Gallego-Bartolome, Javier, Liu, Wanlu, Henderson, Ian R., Meyers, Blake C., Ausin, Israel, Jacobsen, Steven E.
Published in Cell (2015)

Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis

by Zhang, Yu, Harris, C. Jake, Liu, Qikun, Liu, Wanlu, Ausin, Israel, Long, Yanping, Xiao, Lidan, Feng, Li, Chen, Xu, Xie, Yubin, Chen, Xinyuan, Zhan, Lingyu, Feng, Suhua, Li, Jingyi Jessica, Wang, Haifeng, Zhai, Jixian, Jacobsen, Steven E.
Published in Proc Natl Acad Sci U S A (2018)