High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE

by Castellana, Stefano, Fusilli, Caterina, Mazzoccoli, Gianluigi, Biagini, Tommaso, Capocefalo, Daniele, Carella, Massimo, Vescovi, Angelo Luigi, Mazza, Tommaso
Published in PLoS Comput Biol (2017)

Pyntacle: a parallel computing-enabled framework for large-scale network biology analysis

by Parca, Luca, Truglio, Mauro, Biagini, Tommaso, Castellana, Stefano, Petrizzelli, Francesco, Capocefalo, Daniele, Jordán, Ferenc, Carella, Massimo, Mazza, Tommaso
Published in Gigascience (2020)

A primary tumor gene expression signature identifies a crucial role played by tumor stroma myofibroblasts in lymph node involvement in oral squamous cell carcinoma

by Mazzoccoli, Gianluigi, Castellana, Stefano, Carella, Massimo, Palumbo, Orazio, Tiberio, Cristiana, Fusilli, Caterina, Capocefalo, Daniele, Biagini, Tommaso, Mazza, Tommaso, Lo Muzio, Lorenzo
Published in Oncotarget (2017)

Are Gaming-Enabled Graphic Processing Unit Cards Convenient for Molecular Dynamics Simulation?

by Biagini, Tommaso, Petrizzelli, Francesco, Truglio, Mauro, Cespa, Roberto, Barbieri, Alessandro, Capocefalo, Daniele, Castellana, Stefano, Tevy, Maria Florencia, Carella, Massimo, Mazza, Tommaso
Published in Evol Bioinform Online (2019)

Multifaceted enrichment analysis of RNA–RNA crosstalk reveals cooperating micro-societies in human colorectal cancer

by Mazza, Tommaso, Mazzoccoli, Gianluigi, Fusilli, Caterina, Capocefalo, Daniele, Panza, Anna, Biagini, Tommaso, Castellana, Stefano, Gentile, Annamaria, De Cata, Angelo, Palumbo, Orazio, Stallone, Raffaella, Rubino, Rosa, Carella, Massimo, Piepoli, Ada
Published in Nucleic Acids Res (2016)

MicroRNA co-expression networks exhibit increased complexity in pancreatic ductal compared to Vater's papilla adenocarcinoma

by Mazza, Tommaso, Copetti, Massimiliano, Capocefalo, Daniele, Fusilli, Caterina, Biagini, Tommaso, Carella, Massimo, De Bonis, Antonio, Mastrodonato, Nicola, Piepoli, Ada, Pazienza, Valerio, Maiello, Evaristo, di Mola, Fabio Francesco, di Sebastiano, Pierluigi, Andriulli, Angelo, Tavano, Francesca
Published in Oncotarget (2017)

Analysis of clock gene-miRNA correlation networks reveals candidate drivers in colorectal cancer

by Mazzoccoli, Gianluigi, Colangelo, Tommaso, Panza, Anna, Rubino, Rosa, Tiberio, Cristiana, Palumbo, Orazio, Carella, Massimo, Trombetta, Domenico, Gentile, Annamaria, Tavano, Francesca, Valvano, Maria Rosa, Storlazzi, Clelia Tiziana, Macchia, Gemma, De Cata, Angelo, Bisceglia, Giovanni, Capocefalo, Daniele, Colantuoni, Vittorio, Sabatino, Lina, Piepoli, Ada, Mazza, Tommaso
Published in Oncotarget (2016)